Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 461 a.a., ATP-dependent RNA helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  471 bits (1211), Expect = e-137
 Identities = 249/457 (54%), Positives = 320/457 (70%), Gaps = 3/457 (0%)

Query: 2   TAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61
           TAF+TL  L  A L NL+ LGY  MTP+QA +LP IL G D+  QAKTGSGKTAAFG+GL
Sbjct: 6   TAFNTLP-LSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGL 64

Query: 62  LQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
           L  I+   F  QALV+CPTRELADQVA E+RRLAR   N K+LTLCGG  FG Q  SL+H
Sbjct: 65  LNPINPRFFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEH 124

Query: 122 APHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTL 181
             HIIV TPGR+  HL+KG++ L  LNTL++DEADRMLDMGF D+I+++I   P  RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLRKGSLVLHGLNTLILDEADRMLDMGFYDSIEEIIAQCPERRQTL 184

Query: 182 LFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQP 241
           LFSAT+P  I  ++ +  R+P  ++ ++      IEQ+F+E S + ++  + ++L+ ++P
Sbjct: 185 LFSATYPVGIKQLASKFMRNPQQVKAEAFHDDTQIEQRFFEISPEERMDAVVKVLAHYRP 244

Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301
            S V FC TK+  Q   D L   G SA+ LHGDLEQRDRDQ L  FAN S  VLVATDVA
Sbjct: 245 QSTVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVA 304

Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361
           ARGLDI +L++VVN ELA D E+H+HR+GRT RAG  G+AIS  AP EA RA  I  + +
Sbjct: 305 ARGLDIDALDMVVNVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQK 364

Query: 362 IKLNWQTPPANSSI--ATLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419
             L+W    + +S   A L   M+TLCI  G+K K+RPGD+LGALTGD G+ GA +GKIA
Sbjct: 365 SPLSWDQLDSLTSQGGAPLLPAMSTLCIGAGRKDKVRPGDILGALTGDAGVPGAQVGKIA 424

Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLL 456
           +     YVAV +++A +A ++L  GKIKG++ RVR+L
Sbjct: 425 IFDYQAYVAVERSIAKQAVQRLSDGKIKGRSLRVRIL 461