Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 468 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella loihica PV-4

 Score =  457 bits (1175), Expect = e-133
 Identities = 241/458 (52%), Positives = 320/458 (69%), Gaps = 4/458 (0%)

Query: 3   AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62
           AF +L  L PA L  L  +G+  MTP+QA +LPAIL G+DV  Q KTGSGKTAAFGLGLL
Sbjct: 12  AFDSLP-LNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLL 70

Query: 63  QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122
            ++D   F+ Q LVLCPTRELADQVA ELR LAR + N KILTLCGG P G Q  SL+H 
Sbjct: 71  NKLDVKRFRIQTLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGSLEHG 130

Query: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182
            HIIV TPGR++DHL +G + LD ++TLV+DEADRML+MGF   +D +++  P  RQTLL
Sbjct: 131 AHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRERQTLL 190

Query: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYET-SSKGKIPLLQRLLSLHQP 241
           FSAT+PE I  +S +   DPL ++++       IEQ FYE  ++  ++  LQ LL  HQP
Sbjct: 191 FSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLLKHQP 250

Query: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301
            S VVFCNTK++ + V   L   G S ++LHGDLEQRDRDQ L++FAN SA V+VATDVA
Sbjct: 251 ESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVATDVA 310

Query: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361
           ARGLDI +L++VVN+ +A+D EVH+HRIGRT RAG+ G A +    E+  + ++++D L 
Sbjct: 311 ARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLADALG 370

Query: 362 IKLNWQTPPANSSIATL--EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIA 419
            +++ +  P  + + T+  +  M T+ IDGGKK K+RPGD+LG LTGD G++G+++GKI 
Sbjct: 371 REIDGEALPGEALLDTMPPQPRMVTIQIDGGKKQKVRPGDILGCLTGDNGIEGSEVGKIK 430

Query: 420 VHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457
           +     YVAV + V  KA  ++  GK+KGK+ R   LK
Sbjct: 431 ITEFRSYVAVDRKVLRKALNKIVKGKLKGKSYRAWELK 468