Pairwise Alignments

Query, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  278 bits (712), Expect = 3e-79
 Identities = 145/363 (39%), Positives = 220/363 (60%), Gaps = 1/363 (0%)

Query: 15  LTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQA 74
           L  L+ELGY   TP+QAA++  ++AGKD+  QA+TG+GKT AF L LL  ID +    Q 
Sbjct: 18  LRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAIDPNRNVPQI 77

Query: 75  LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 134
           LVL PTRELA QVA      ++F+    +L + GGQ    Q ++L+  P I+V TPGR++
Sbjct: 78  LVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRRGPQIVVGTPGRVM 137

Query: 135 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 194
           DH+++GT+ L+ LN LV+DEAD ML MGF D I+ ++   P  RQ  LFSAT PE I  +
Sbjct: 138 DHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMPEQIKRV 197

Query: 195 SGRVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 253
           + +  + P+ I I  S   +  IEQ+F + S   K+  L R+L +      ++F  T+  
Sbjct: 198 ANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNS 257

Query: 254 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 313
           C  + + L   G ++  LHGD+ Q+ R++ + +   G   +L+ATDVAARGLD++ +  V
Sbjct: 258 CVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHV 317

Query: 314 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 373
           +N+++ +D E +VHRIGRT RAG +G+AI F    E +    I    + +++    P+  
Sbjct: 318 INYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMNVPSPE 377

Query: 374 SIA 376
           ++A
Sbjct: 378 TVA 380



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 379 EAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAW 438
           + +M    +D G+   +  G+++GA+  +  +D   IG+I +      + + + +     
Sbjct: 488 DVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPEGMPKDVL 547

Query: 439 KQLQGGKIKGKTCRVR 454
           + L+  ++ GK   +R
Sbjct: 548 QHLKKVRVCGKPLNIR 563