Pairwise Alignments

Query, 280 a.a., predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 293 a.a., sugar ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  179 bits (455), Expect = 5e-50
 Identities = 95/272 (34%), Positives = 160/272 (58%), Gaps = 7/272 (2%)

Query: 11  IGFYCGLALFLIITLFPFFVMLMTSFKGAKEAISLHPTLLPQQWTLEHYVDIFNPMIFP- 69
           +  Y  L +FL + LFPF+ M++T+FK   E +S         W +   +  F  ++F  
Sbjct: 25  VTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQSGNPF---WVIAPTLAHFKKLLFDT 81

Query: 70  -FVDYFRNSLVVSVVSSVVAVFLGILGAYALSRLRFKGRMTINASFYTVYMFSGILLVVP 128
            +  +  N+++VSVVS+  ++   +  AYA+ RLRF+G   +    +  Y+    +L +P
Sbjct: 82  QYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIP 141

Query: 129 LFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDGLNRLQIIF 188
           L  I+  LG++DT  ALI+T  T  +P   ++L  YF +IP E+EE A++DG  R +I+ 
Sbjct: 142 LAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILV 201

Query: 189 RITVPLAMSGLISVFVYCFMVAWNDYLFASIFLSSASNFTLPVGL-NALFSTPDYIWGRM 247
           +I +PLA+ GLIS  ++ F ++WN++++A  F+SS+   T+PVG+   L     Y WG +
Sbjct: 202 KIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTELVEGDVYHWGAL 261

Query: 248 MAASLVTALPVVIMYALSERFIKSGLTAGGVK 279
           MA +L+ +LPV ++Y+    +  SG+T G VK
Sbjct: 262 MAGALLGSLPVAVVYSFFVEYYVSGMT-GAVK 292