Pairwise Alignments

Query, 293 a.a., predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 416 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  152 bits (383), Expect = 2e-41
 Identities = 81/229 (35%), Positives = 136/229 (59%), Gaps = 6/229 (2%)

Query: 57  VSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREFRLRKTARSLVILSY 116
           + N+ RI     FW  L +T++YT     G+ + GL  A+  N+ FR +   R L +  Y
Sbjct: 178 LENFARIFDADEFWGVLGVTMFYTVFGTLGALLFGLFAALLLNKSFRGQGILRGLYLFPY 237

Query: 117 VTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPGSSFVLVVLFAIWRYFP 176
           V P I++ F W  +F+   G  N L + +  +  +A  +F     + ++V +F IWRYFP
Sbjct: 238 VAPVIAVAFTWVTLFDPFSGSANALLIQM-GVTNEAINFFGQRPLALIMVTVFEIWRYFP 296

Query: 177 YAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFA 236
            +F+  LA +Q+ID  +YEAA+MDGA+ +Q+F  ++LP ++ +L+ +  LR IW F  F 
Sbjct: 297 LSFLFILARMQSIDTDMYEAADMDGASPFQKFWYLSLPMLVGILSVLFLLRFIWTFNKFD 356

Query: 237 DVYLLT---TKVDILGVYLYKTAFAFNDLGKAAAISVVLF--IIIFAVI 280
           D++LLT        L V +Y+ AFA +++G  AA++VV+F  +++F+V+
Sbjct: 357 DIFLLTGGNAGTRTLTVNVYEQAFAVSNIGAGAAVAVVIFGCLLLFSVL 405