Pairwise Alignments

Query, 661 a.a., modulator of Rnase II stability (NCBI) from Escherichia coli BW25113

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  352 bits (904), Expect = e-101
 Identities = 202/549 (36%), Positives = 313/549 (57%), Gaps = 23/549 (4%)

Query: 115 QVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNR 174
           +V +     IV+L+    ++  N   E  TGL   D+ G+   +LF     A+    N+ 
Sbjct: 292 KVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPA-RLF-----ASGLHENDF 345

Query: 175 VFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGS---------GKNEIFLICSGTDITE 225
           +   +       LW     G+R    R    +SG                 + + TDIT+
Sbjct: 346 LATVAAEVDRAGLWRGEIWGER----REGPPYSGEMTVTAVRTRAGETTHYVAAITDITK 401

Query: 226 ERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNN--KVGVVYLDLDNFKKVNDA 283
            +R +E +R  AN D +T LPNR+ + D ++ A++ A     +V V++LDLD FK++ND+
Sbjct: 402 RKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDS 461

Query: 284 YGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTS-QSALEAMASRILTRLR 342
           YGH  GD++L+  +  + +C+     + R GGDEF+V+ SN   Q A   +A +IL  L 
Sbjct: 462 YGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLS 521

Query: 343 LPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQR 402
            PF IG  EV+   SVGI   P+HG  +  ++R+AD AMY AK+GG  ++ +FTP+M +R
Sbjct: 522 EPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARR 581

Query: 403 VFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYA 462
               L ++++LR AL  D+  +H+QPK+     +   EAL+RW+ PE+GLI P DFI  A
Sbjct: 582 SLALLTMESDLRHALARDEFELHFQPKVRADLTLIGAEALIRWRHPEKGLINPGDFIPLA 641

Query: 463 EESGLIVPLGRWVILDVVRQVAKWRDKGINL-RVAVNISARQLADQTIFTALKQVLQELN 521
           EESGLI+P+GRW + +   +V  WR +G+ +  V+VN+S RQ  DQT+   ++Q+L E  
Sbjct: 642 EESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVETG 701

Query: 522 FEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIK 581
            E   +D+E+TE+ +  + E A+  ++    LG  + +DDFGTGYSSL+ L  FPID +K
Sbjct: 702 LEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLK 761

Query: 582 LDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLF 641
           +DQ FVRD+       ++V  I+A+A+ L   V+AEGVE  ++  FL        QGFL+
Sbjct: 762 IDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLY 821

Query: 642 AKPMPAVAF 650
           ++P+P   F
Sbjct: 822 SRPLPPAEF 830



 Score = 29.3 bits (64), Expect = 8e-04
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 183 YEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSI 242
           +  E+W   C G  +++  N     G     ++   +  DIT +R++QE +R+L    + 
Sbjct: 239 FTAEVW--RCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTS 296

Query: 243 TGLPNRNAMQDLIDHAINHADNNKVGVVYLDLD 275
                    +DL    +N A     G++  D++
Sbjct: 297 IAEGIVLLERDLTVRTVNPAFEAMTGLLRQDME 329