Pairwise Alignments

Query, 578 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 599 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (301), Expect = 2e-31
 Identities = 102/374 (27%), Positives = 173/374 (46%), Gaps = 12/374 (3%)

Query: 29  RLGIPILVIFLAIGMLAG-VDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRV 87
           RL +P ++  L  G+LAG V GV           + + +LA+A+IL +G +       R 
Sbjct: 27  RLRLPAILFLLLAGILAGPVFGVLNPEALMGDLLFPLVSLAVAVILFEGSLTLNFKEIRG 86

Query: 88  ALGPALSLATLGVLITSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLN 147
                 S+ T+G L++ G+T   A WL   +    L+ G++   T    +  LL      
Sbjct: 87  VSNTVWSIVTVGALVSWGITSTAAHWLLGFEWPLALMFGSLTVVTGPTVIVPLLRTVRPT 146

Query: 148 ERVGSTLEIESGSNDPM-AVFLTITLIAMIQHHESNISWMFIVDILQQFGLGIVIGLGGG 206
            R+ + L  E    DP+ A+F+ +    ++    ++   +F + +L    +G  IG+  G
Sbjct: 147 ARLANILRWEGILIDPLGALFVVMVYEFIVSSSHAHSLEVFSLILL----VGFSIGIASG 202

Query: 207 YLLLQMINRIALPAGLYPLLALSGGILIFSLTTALEG-SGILAVYLCGFLLGNRPIRNRY 265
             +  ++ R  LP  L P   LS  + +F+ + ALE  SG+L V + G  L N    N  
Sbjct: 203 VAVAAVLRRGLLPEYLQPFAVLSVVLGVFAASNALESESGLLTVTVMGMWLANAKGVNIQ 262

Query: 266 GILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPF 325
            IL   + L  L    +F++L   +  +D   +   AL L   M   ARP S+F   L  
Sbjct: 263 HILHFKEHLTILLITGLFILLAARIEVADFQALGWSALGLFVVMQLLARPASIFISTLR- 321

Query: 326 RGFNLRERVFISWVGLRG----AVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGT 381
              N+RE+ F++WV  RG    ++  + A+  M  G+ +A+L   + F V++ +++LQ  
Sbjct: 322 STLNVREKAFLAWVAPRGIVAASISSLFAIKLMEFGIADAKLLVPLTFMVIIGTVVLQSA 381

Query: 382 SLSWAAKKAKVVVP 395
           +    A   KV  P
Sbjct: 382 TARPMALALKVSEP 395