Pairwise Alignments

Query, 578 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 610 a.a., sodium/hydrogen exchanger (NCBI) from Rhodospirillum rubrum S1H

 Score =  388 bits (997), Expect = e-112
 Identities = 221/555 (39%), Positives = 343/555 (61%), Gaps = 17/555 (3%)

Query: 1   MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPF 60
           M+  T+    ++G+ L+  S++ S  S R+G P+L++FL +G+LAG DG+GGI F++   
Sbjct: 1   MEMDTMFLAILIGAGLIGISVVTSLISFRVGAPLLLVFLGVGLLAGQDGIGGIVFNDSGT 60

Query: 61  AYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFNLDLI 120
           AY + +LALA+IL D G  T+  +FR+A  P++ LATLGV +T+ L  + +  L  L   
Sbjct: 61  AYFIGSLALAVILFDSGFSTRLQTFRLAAAPSIVLATLGVALTTALVAIPSHSLLGLSWE 120

Query: 121 EGLLIGAIVGSTDAAAVFSLL--GGKGLNERVGSTLEIESGSNDPMAVFLTITLIAMIQ- 177
           E  L+GA+VGSTDAAAVF LL  GG  + +RV +TLE+ES +NDPMA+FLTITL+ +   
Sbjct: 121 ESALMGAVVGSTDAAAVFFLLRVGGILIRDRVRATLEVESSTNDPMAIFLTITLVELASA 180

Query: 178 --HHESNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIALPAGLYPLLALSGGILIF 235
                  +SW   +  ++Q GLG++ G  GG+LL+  INR+ L   LYP+L L+  + +F
Sbjct: 181 GGFSGEALSWGLGLAFVRQMGLGLLCGWIGGHLLVVGINRLRLEPALYPILGLALALFLF 240

Query: 236 SLTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDL 295
           +  + ++GSG LA+Y+ G ++GNR +R    + +  + L WLAQ+ MFL LGL  +PS  
Sbjct: 241 AAVSMVDGSGFLAIYVAGMVMGNRKMRGGPALRRFQEALTWLAQMTMFLTLGLFASPSTF 300

Query: 296 LPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMM 355
           + +A+P++++  +++F ARP++V+  LLPF G++  E  F++WVGLRGAV I+LA+ P+ 
Sbjct: 301 IDVALPSVLIGLFLVFVARPVAVWLCLLPF-GYDRNETAFVAWVGLRGAVSILLAILPIA 359

Query: 356 AGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENPWE 415
           AGLE+A+  FN AF VV+ SLLLQG ++   A+   +VVPP   PV +V L +      E
Sbjct: 360 AGLEHAQEMFNAAFIVVVTSLLLQGWTIRPMARWLGLVVPPRLGPVDKVELQLPYGGDHE 419

Query: 416 QFVYQLSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERD 475
             VY+++              +P+  R + + RD + +    S R + GD + +    R 
Sbjct: 420 LLVYRIAKG----SPVAEGERIPRWARPSLVVRDGRSMKVLDSGRPQPGDHVYIFSAPRH 475

Query: 476 LPALGKLFSQSPPVAL---DQRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEI 532
              L +LF++  P AL   D+ +FGDF L+AS    ++A +YG++     +D    +GE 
Sbjct: 476 GALLDRLFAR--PTALSPADEAYFGDFSLDASRTMGELATLYGIKVPEGAQD--TAVGEW 531

Query: 533 VQQLLGAAPVVGDQV 547
           + Q LG AP  GD+V
Sbjct: 532 LTQRLGGAPARGDRV 546