Pairwise Alignments

Query, 578 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

Subject, 490 a.a., putative Na+/H+ exchanger (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  321 bits (822), Expect = 5e-92
 Identities = 188/487 (38%), Positives = 289/487 (59%), Gaps = 29/487 (5%)

Query: 5   TIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGMLAGVDGVGGIPFDNYPFAYMV 64
           T  +  ++GSIL+  SI++     R G+P L++FL +GML G DG+G + F +   A  +
Sbjct: 4   TAENTLLIGSILLFVSIVVGKTGYRFGVPTLLLFLVVGMLFGSDGLG-LQFHDAKDAQFI 62

Query: 65  SNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLITSGLTGMMAAWLFN-------L 117
             +AL+IIL  GGM T+    +  LGP + L+T+GVL+T+  TG+   WL         L
Sbjct: 63  GMVALSIILFSGGMDTKFREIKPILGPGIVLSTVGVLLTALFTGLFIWWLSGMSWTNIYL 122

Query: 118 DLIEGLLIGAIVGSTDAAAVFSLLGGKGLN--ERVGSTLEIESGSNDPMAVFLTITLIAM 175
            +   LL+ + + STD+A+VF++L  + +N    +   LE+ESGSNDPMA  LTI LI  
Sbjct: 123 PITTSLLLASTMSSTDSASVFAILRSQKMNLKHNLRPMLELESGSNDPMAYMLTIVLIQF 182

Query: 176 IQHHESNISWMFIVDILQQFGLGIVIGLGGGYLL----LQMINRIALP-AGLYPLLALSG 230
           IQ      + M +  I   F +  ++G   GY+L    ++M+N++ +    LYP+L L+ 
Sbjct: 183 IQS-----AGMGVGAIAASFIIQFIVGAAAGYVLGKLAIRMLNKLNIDNQALYPILLLAF 237

Query: 231 GILIFSLTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWLAQIAMFLVLGLLV 290
               FS+T  L+G+G LAVY+ G ++GN  I +R  I    DGL WL QI MFL LGLLV
Sbjct: 238 VFFTFSITDLLKGNGYLAVYIAGIMVGNNKIMHRKDIYTFMDGLTWLFQIIMFLCLGLLV 297

Query: 291 NPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLRGAVPIILA 350
           NP ++L +A  AL++  +MI   RPLSVF  LLPFR   ++ R+F+SWVGLRGAVPII A
Sbjct: 298 NPHEMLEVAAVALLIGVFMIVIGRPLSVFLCLLPFRKITMKSRLFVSWVGLRGAVPIIFA 357

Query: 351 VFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHP 410
            +P++AG+E + + FNV FF+ +VSL++QGT++S+ A+     +  + +P+ + G D   
Sbjct: 358 TYPVVAGVEGSNIIFNVVFFITIVSLVVQGTTVSFVAR-----LLHLSKPLEKTGNDFGV 412

Query: 411 ENPWEQFV----YQLSADKWCVGAALRDLHMPKETRIAALFRDNQLLHPTGSTRLREGDV 466
           E P E         ++ +       L+D+++PK T +  + R ++ L P G+ +L   D 
Sbjct: 413 ELPEEIDTDLKDMTITQEMLEEADTLKDMNLPKGTLVMIVKRGDEFLIPNGTLKLHVNDK 472

Query: 467 LCVIGRE 473
           L +I  +
Sbjct: 473 LLLISEK 479