Pairwise Alignments

Query, 422 a.a., DNA polymerase V subunit UmuC (NCBI) from Escherichia coli BW25113

Subject, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  104 bits (259), Expect = 5e-27
 Identities = 111/393 (28%), Positives = 180/393 (45%), Gaps = 30/393 (7%)

Query: 6   DVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFRR 64
           D++AF+AS E +  P L G+PV+V  +++ G V A + EA+  GV+   P    + L   
Sbjct: 4   DMDAFFASVEQLDDPSLRGRPVIVGGSSERGVVSAASYEARRYGVRSAMPTVTARRLCPH 63

Query: 65  CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREI 123
              V  S     YA++S  VM+ L + SP VE  S+DEA+ D TG+ R    + +  + +
Sbjct: 64  G--VFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQRL 121

Query: 124 RATVLQRT-HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182
           +  V + T  LT  VG+A  K LAK+A+   K       GV  L   E     ++ LPV 
Sbjct: 122 KGRVREATGGLTCSVGLAPVKFLAKIASDVNK-----PDGVFILPP-EDVAAFLATLPVG 175

Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQLEE 239
            + G+G+R+ + LD +G++T  D+    + F  + F    +VL    R +   P   LE 
Sbjct: 176 RIPGVGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRP---LEP 232

Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299
           + P K E     +      D   +R+ + + A R    LR +    R I+  +K + F  
Sbjct: 233 WTPPKSE-SAEVTLAADTADRAVLRRWLLAQAERVGGSLRRQGLAGRTITLKVKYADFR- 290

Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359
                  + S  L  P   ++ I   A   L+A+     + +  G+ +  F   G  Q++
Sbjct: 291 -----QLTRSRTLPEPVSATQTIFEEAWALLEAL-DLEAKVRLVGLGVSHF--GGERQMS 342

Query: 360 LFDDNAPRPGS---EQLMTVMDTLNAKEGRGTL 389
           L     PR      E+L   +D L A+ G G +
Sbjct: 343 LPIGGMPRRDDTRRERLDATLDRLRARFGAGAV 375