Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 331 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score =  144 bits (364), Expect = 2e-39
 Identities = 104/325 (32%), Positives = 159/325 (48%), Gaps = 32/325 (9%)

Query: 7   SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
           S++   +    AG+R D  L        +S +   ++ G+  ++ +  +P   L  G+ V
Sbjct: 12  SLRQAVVPDSAAGRRFDAVLAELFPEFSRSRLSEWIKSGDALLDGETARPRDTLRGGETV 71

Query: 67  RIPPVRVAEREEEAVSPHLQKVAALADV---ILYEDDHILVLNKPSGTAVHGGSGLSFGV 123
           ++  V              Q  AA  D+   +LYEDDH+LV++KP+G  VH G+G   G 
Sbjct: 72  QVQVVL-----------ETQTHAAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGT 120

Query: 124 IEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176
           +      R       P A    +VHRLD+DTSGV++VA+   A  +L EQL  + + + Y
Sbjct: 121 LVNALLFRDPNLAAVPRAG---VVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQY 177

Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236
           LA+V G   S   +  AP+ ++     +  VR   +G+ + T +++ ER+   T + C  
Sbjct: 178 LAVVVGALVSG-GTADAPIDRHPRDRLKMAVR--DDGRDAVTHYRLRERFRAHTALECRL 234

Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNRLFLHAAALKFTH 291
            TGRTHQIRVH  +   PI  D  YG      +     L     G  R  LHA  L+F H
Sbjct: 235 ETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPKGATDTLVAELRGFKRQALHAETLEFLH 294

Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLR 316
           P +GE +R  AP+ E L+R +  LR
Sbjct: 295 PVSGEPIRASAPVPEDLQRLMSALR 319