Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas syringae pv. syringae B728a

 Score =  347 bits (891), Expect = e-100
 Identities = 186/314 (59%), Positives = 233/314 (74%), Gaps = 9/314 (2%)

Query: 5   TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64
           TP V++V +  + AGQRIDNFL T LKGVPK++IYRILRKGEVRVNK RIKPEYKL+AGD
Sbjct: 8   TPGVQLVEVAPELAGQRIDNFLITYLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGD 67

Query: 65  EVRIPPVRVAEREEEA--VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122
            VRIPPVRV ER+E        LQ++ A    I+YED  ++VLNKP+G AVHGGSGLSFG
Sbjct: 68  IVRIPPVRVPERDEPVPVAQALLQRLEA---AIVYEDKALIVLNKPAGIAVHGGSGLSFG 124

Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182
           VIE  R LRP+A+ LELVHRLDRDTSG+L++AKKRS LR LHE LR  G+ K Y+ALVRG
Sbjct: 125 VIEAFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRG 184

Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRT 241
            W + +K V+APL+K+ L+SGER+V V++EGK + T FKV  R+  FAT+V   PVTGRT
Sbjct: 185 NWATALKQVRAPLMKSNLRSGERMVEVNEEGKEALTIFKVLRRFGDFATMVEAKPVTGRT 244

Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301
           HQIRVHT +AGH IA D +YGD  F R++ + G    RLFLHA  L    P  G  + ++
Sbjct: 245 HQIRVHTLHAGHAIAGDTKYGDENFSREIRDLGG--KRLFLHAYMLTVPMP-DGSKLNVQ 301

Query: 302 APMDEGLKRCLQKL 315
           AP+D+   + +++L
Sbjct: 302 APVDDMWAKTVERL 315