Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  399 bits (1025), Expect = e-116
 Identities = 208/315 (66%), Positives = 245/315 (77%), Gaps = 3/315 (0%)

Query: 2   KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61
           +T    V++++I  D AGQRIDNFL  +LKGVPKSMIYRI+RKGEVRVNKKRIKPEYKL 
Sbjct: 14  ETVPTQVQLISIDEDGAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLA 73

Query: 62  AGDEVRIPPVRVAERE-EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120
           AGDEVR+PPVRVAE++   A S +L +VA L D IL+ED  I+VLNKP+G AVHGGSG+ 
Sbjct: 74  AGDEVRVPPVRVAEKDYRTAPSANLNRVAQLEDRILFEDKQIIVLNKPAGIAVHGGSGVD 133

Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180
           +GVIE LR+LRP  +FLELVHRLDRDTSGVLL+AKKR ALR LH+QLR K MQK Y ALV
Sbjct: 134 YGVIESLRSLRPTCKFLELVHRLDRDTSGVLLIAKKRMALRHLHDQLRNKQMQKVYQALV 193

Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240
           RGQWQ H + V+APLLK  L+SGERIVRV+ EGKPSETRF+V  R+  A+LV  SPVTGR
Sbjct: 194 RGQWQEHDRVVKAPLLKITLKSGERIVRVNSEGKPSETRFRVLRRFDEASLVEASPVTGR 253

Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300
           THQIRVH QY GHPIA DD+Y +++FD  +     GL RLFLHAA L FTHP +   M +
Sbjct: 254 THQIRVHCQYQGHPIACDDKYSEQKFDDAM--RAKGLQRLFLHAAQLTFTHPESETQMTV 311

Query: 301 EAPMDEGLKRCLQKL 315
           +AP+D  L   L  L
Sbjct: 312 QAPLDGDLTAVLDAL 326