Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  142 bits (358), Expect = 1e-38
 Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 33/320 (10%)

Query: 6   PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGD 64
           P V   A+ A+ AGQR+D +L T +  + ++ + +++ +  V VN + I +   +++ G 
Sbjct: 22  PIVYERAVDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQ 81

Query: 65  EVRI---PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121
            VR+   PP+    + E           A+A  ++YEDD ++V++K +G  VH G G   
Sbjct: 82  TVRVEEPPPIAATPQPE-----------AIALTVVYEDDDLIVIDKAAGMVVHPGPGNPD 130

Query: 122 GVI---------EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172
             +           L  +  E R   +VHRLD+DTSG+++ AK   A   L EQ     +
Sbjct: 131 HTLVNALLAHCGPSLSGIGGERR-PGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSL 189

Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE-ERYAFATL 231
            ++YL LV G+ +    S+ APL ++  Q  +  V VS+ GK + T ++V  +    A++
Sbjct: 190 TREYLCLVWGRPRPAAGSIDAPLGRHPTQRKKMAV-VSRGGKRALTHYRVVGDVEGIASI 248

Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQ----LTEAGTGLNRLFLHAAAL 287
           V+C+  TGRTHQ+RVH  + GHP+  D  YG R   ++    L+E    L R  LH+  L
Sbjct: 249 VKCTLSTGRTHQVRVHMAHIGHPLLGDAVYGHRNIPKKLPGDLSERIARLTRQALHSFHL 308

Query: 288 KFTHPGTGEVMRI--EAPMD 305
            F HP TGE +    E P+D
Sbjct: 309 GFLHPRTGESLEFLSELPLD 328