Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 370 a.a., RluA family pseudouridine synthase from Ralstonia sp. UNC404CL21Col

 Score =  146 bits (368), Expect = 9e-40
 Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 26/326 (7%)

Query: 6   PSVKIVAITADEA--GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63
           P+ + + +   EA  G+R+D  L   L    +S + + +  G VR+  + ++P   +  G
Sbjct: 46  PAAEPIIVEIPEAMHGERLDKALAKLLPDYSRSRLQQWIDAGAVRLRGEVVRPRAAISGG 105

Query: 64  DEVRIPPVRVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFG 122
           D + + P R A+       P         D+ ++YEDD +LV+NKP+G  VH  +G   G
Sbjct: 106 DRIEVVPQRAADENAFVAEP--------IDLDVVYEDDTLLVINKPAGLVVHPAAGNWSG 157

Query: 123 -VIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178
            V+ GL    P+A  L    +VHRLD+DTSG+++VA+   A   L  QL+ + +++ YLA
Sbjct: 158 TVLNGLLHRYPDAVELPRAGIVHRLDKDTSGLMVVARTLPAQTDLVRQLQARTVKRTYLA 217

Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFK----VEERYAFATLVRC 234
           LV G+      ++ AP+ ++        +  +  GKP+ T FK    V+   A  +LVRC
Sbjct: 218 LVWGETPEEA-TIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVRC 276

Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA-----GTGLNRLFLHAAALKF 289
              TGRTHQIRVH +  GHP+  D  Y  R F R   +           R  LHA  L  
Sbjct: 277 QLETGRTHQIRVHFESEGHPLLGDPVY-TRNFRRGQPQTIKAPLPVPFARQALHAVRLGL 335

Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKL 315
            HP TG+ +  EA + +     L+ L
Sbjct: 336 VHPATGKSVHWEAGVPDDFADLLEAL 361