Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 344 a.a., RluA family pseudouridine synthase from Ralstonia sp. UNC404CL21Col

 Score =  293 bits (751), Expect = 3e-84
 Identities = 161/300 (53%), Positives = 202/300 (67%), Gaps = 7/300 (2%)

Query: 7   SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
           SV  V I  D  GQRIDNFL    KGVPKS IYRI+R GEVRVNK RI  EY+L+ GD V
Sbjct: 28  SVAYVEIGEDAEGQRIDNFLMRVAKGVPKSHIYRIVRSGEVRVNKGRIDAEYRLKLGDLV 87

Query: 67  RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
           RIPP+R+A++ E       + V A    IL+ED H+LV++KP+G AVHGGSG++FGVIE 
Sbjct: 88  RIPPLRIAQQAEAP-----RAVPAAEFTILHEDTHLLVIDKPAGVAVHGGSGVAFGVIEQ 142

Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
           LR  RPEA+FLELVHRLDR+TSGVLL+AKKRSAL +LHEQ+RE  + K Y A V+G W  
Sbjct: 143 LRQSRPEAKFLELVHRLDRETSGVLLLAKKRSALVALHEQIREGQLDKRYFAAVKGVWPH 202

Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
             + +++PL K     GER VRV  +G+ S T F     +   TL+     TGRTHQIRV
Sbjct: 203 KRQHIKSPLHKYTTPEGERRVRVQADGQASHTIFNKVGVFGPYTLLEAELKTGRTHQIRV 262

Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTG--LNRLFLHAAALKFTHPGTGEVMRIEAPM 304
           H  +AG PI  DD+YGD   ++ L+ A     L R+FLHA  L+ THP +GE++   AP+
Sbjct: 263 HLAHAGCPILGDDKYGDFALNKALSRANASPRLARMFLHAHRLQLTHPQSGEIVTFTAPL 322