Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 341 a.a., ribosomal large subunit pseudouridine synthase C from Burkholderia phytofirmans PsJN

 Score =  296 bits (759), Expect = 4e-85
 Identities = 162/317 (51%), Positives = 207/317 (65%), Gaps = 8/317 (2%)

Query: 8   VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67
           V ++ I    AGQRIDNFL    KGVPKS IYRILR GEVRVNK RI  +Y+LE GD VR
Sbjct: 17  VSMIEIDDSAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRIDAQYRLELGDLVR 76

Query: 68  IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127
           +PP+RVA+  E A       V A    I++ED+H+LV++KP+G AVHGGSG++FGVIE +
Sbjct: 77  VPPIRVAQPSETATQA---PVPAAHFKIIFEDEHLLVIDKPAGVAVHGGSGVAFGVIEQM 133

Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS- 186
           R  RP+A+FLELVHRLDR+TSG+L++AKKRSAL +LHEQ+RE  M K Y A V G W S 
Sbjct: 134 REARPQAKFLELVHRLDRETSGILMLAKKRSALVNLHEQIRENKMDKRYYACVHGDWASD 193

Query: 187 --HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244
               ++V+ PL K +   GER VRV  +G  S T F + +R+    L+     TGRTHQI
Sbjct: 194 WGRRRAVKEPLHKYLTADGERRVRVQPDGLASHTVFNLIDRWPEYALLEAELKTGRTHQI 253

Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGT--GLNRLFLHAAALKFTHPGTGEVMRIEA 302
           RVH Q+   PI  D +YGD   ++ L  A    GL R+FLHA  LK THP TG  ++ EA
Sbjct: 254 RVHLQHLELPIVGDAKYGDFALNKALARANAKPGLKRMFLHAYRLKLTHPATGAPLQFEA 313

Query: 303 PMDEGLKRCLQKLRNAR 319
           P+    +  + +L   R
Sbjct: 314 PLPAECRSFIAQLNELR 330