Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase (NCBI) from Escherichia coli BW25113

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  407 bits (1047), Expect = e-118
 Identities = 208/321 (64%), Positives = 255/321 (79%), Gaps = 5/321 (1%)

Query: 1   MKTETPSVKIVAITADE--AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58
           M TE+P +++  IT DE    QRIDNFL T LKGVPKSMIYRI+RKGEVRVNKKRIKPEY
Sbjct: 11  MNTESPQLQVQLITIDEDHLDQRIDNFLITVLKGVPKSMIYRIVRKGEVRVNKKRIKPEY 70

Query: 59  KLEAGDEVRIPPVRVAEREEE-AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117
           KL+ GD VR+PPVR+AE++   A S +L +V+ L D IL+ED+H++VLNKP+G AVHGGS
Sbjct: 71  KLQIGDVVRVPPVRMAEQDNRTAPSANLSRVSQLEDRILHEDNHLIVLNKPAGIAVHGGS 130

Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177
           G+ +GVIE LR+LRP+ +FLELVHRLD+DTSGVLLVAKKRSAL+ +H+QLR K MQKDYL
Sbjct: 131 GVDYGVIEALRSLRPQQKFLELVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYL 190

Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237
           ALV+G+W +  K V+ PLLK  L+SGERIVRV+ EGKPSETRFK+ +RY   TLV+ SPV
Sbjct: 191 ALVKGEWSAQDKVVKQPLLKLTLKSGERIVRVNAEGKPSETRFKIVQRYQGCTLVQASPV 250

Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297
           TGRTHQIRVH QY GHPIA D++Y ++ FD  +     GL RLFLHAA L F HP   EV
Sbjct: 251 TGRTHQIRVHCQYMGHPIACDEKYSEQAFDDSM--RALGLTRLFLHAAELMFIHPENDEV 308

Query: 298 MRIEAPMDEGLKRCLQKLRNA 318
           MR+ AP+D+ L++ L KL+ A
Sbjct: 309 MRVSAPLDDNLQQLLSKLKRA 329