Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 1120 a.a., RNAse E from Pseudomonas syringae pv. syringae B728a

 Score =  801 bits (2068), Expect = 0.0
 Identities = 524/1068 (49%), Positives = 632/1068 (59%), Gaps = 95/1068 (8%)

Query: 1    MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
            MKRMLINATQ EELRVALVDGQRLYDLDIES   EQKKANIYKG+ITRIEPSLEAAFVD+
Sbjct: 17   MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF 76

Query: 61   GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
            G+ERHGFLPLKEI+REYF    +  GR NIKDVL EGQEVIVQ++KEERGNKGAALTTFI
Sbjct: 77   GSERHGFLPLKEISREYFKK--APEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFI 134

Query: 121  SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
            SLAG YLVLMPNNPRAGGISRRIEG++R EL+EAL  L  P  MGLIVRTAG+G+S+E +
Sbjct: 135  SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEM 194

Query: 181  QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240
            QWDL + L+ W AIK+A+  R APFLI+QESNVI+RA RDYLRQDIGE+LID+ +  E A
Sbjct: 195  QWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEA 254

Query: 241  RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300
               I  +  P ++SKIKLY   +PLF+ +QIESQIE+AFQR V LPSGGSIVID TEAL 
Sbjct: 255  LTFIRQV-MPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALV 313

Query: 301  AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360
            +IDINSARAT+G DIEETA  TNLEAA+EIARQLRLRD+GGLIVIDFIDMTP ++QRAVE
Sbjct: 314  SIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVE 373

Query: 361  NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420
             ++RE++  DRAR+QI  ISRFGLLEMSRQRL PSLGESS  VCPRC+GTG +RD ESLS
Sbjct: 374  EKVRESLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLS 433

Query: 421  LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480
            L+ILRLIEEEALK+ T EV A VP+P+A++LLNEKR+++  IE R    R +I+PNDQ+E
Sbjct: 434  LAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELR-TRARIIILPNDQLE 492

Query: 481  TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD--VP 538
            TPH+ V R+R  +++P  ++     +E A A    EE A    P   A  T    +  V 
Sbjct: 493  TPHFEVQRLR--DDSPE-AHSSQTSYEIAAAAAEVEEIA----PLAAATRTLVRQEAAVK 545

Query: 539  PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEE-TKPTEQPAPK 597
             AP  A    PV A AP   PA      +P L      +L +LF+  EE   P     P 
Sbjct: 546  TAPARANAPVPVEAAAPAPTPAPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPV 605

Query: 598  AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657
            AE +P R ++RR  RQ + R RN RRD   +  E    REE      + ++   E R  R
Sbjct: 606  AEQRPARNEERRNGRQQS-RGRNNRRDEERKPREERAPREERAERAPREERAPREERAPR 664

Query: 658  QQAEVTEKARTADEQQAPRRERSRR--RNDDKRQAQQEAKALNVEE--QSVQETEQEERV 713
            ++  V E  R A E+  PR ER  R  R    R+A+++     + E   +          
Sbjct: 665  EERTVRE-PREAREESTPREERPARTTRERKPREAREDRPVRELREPLDAAPAVSLAREE 723

Query: 714  RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773
            RP +  R++RQ        Q  AE+A  A   EE V                        
Sbjct: 724  RPERAPREERQPRAPREERQPRAEQAAAAVSEEEEVLLNE-------------------- 763

Query: 774  AQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRD---------ERYPTQS 824
             QT  E QE N+    D      R RR  R  R    RR R RD         E    + 
Sbjct: 764  EQTNNENQEGNDGSEGD------RPRRRSRGQRRRSNRRERQRDANGNVIEGSEENGNEE 817

Query: 825  PMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQ----------EEVHVQPMVTEV 874
                T   A     +        I  P +    +Q E+          E VH Q    E 
Sbjct: 818  EGSATDLSAGLGFTAAASAASSVISAPAEADAHQQAERANSNAATADAEPVH-QETAAEA 876

Query: 875  PV---AAAIEPVVSAPVVEEV---------AGVVEAPV----QVAEPQPEVVETTHPEVI 918
            PV   + A  P   APV E+          A  VEAPV     VA+P PEV      EV 
Sbjct: 877  PVTETSVAETPATEAPVAEKAQTVAEPTVEAPAVEAPVADDAPVAQPAPEV------EVQ 930

Query: 919  AAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETA--EVVVAEPEVVAQ 976
             AAV E P +  +S++  A   AE+  P  +P  E A    V   A  EV   E   +  
Sbjct: 931  PAAV-EAPAIAAQSELFEAPH-AERVVP-FKPTPEPAPQAPVEAAAHEEVPATESSELPT 987

Query: 977  PA-APVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP 1023
            PA A VV  VA + E    V P+  VE   A AP  +APA E    AP
Sbjct: 988  PAPAAVVEPVALQEEPAPYVAPQPVVE-EQAPAPQEQAPAAEEAAPAP 1034



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 58/232 (25%), Positives = 88/232 (37%), Gaps = 43/232 (18%)

Query: 503  PKLHEEAMALPSEEEFAERKRPEQPALAT----FAMPD----VPPAPTPAE-PAAPVVAP 553
            P   +  +A P+ E   +    E PA+A     F  P     VP  PTP   P APV A 
Sbjct: 913  PVADDAPVAQPAPEVEVQPAAVEAPAIAAQSELFEAPHAERVVPFKPTPEPAPQAPVEAA 972

Query: 554  APKAAPAT---------PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPER 604
            A +  PAT         PAA  +P  L        A +   +     + PAP+ +A    
Sbjct: 973  AHEEVPATESSELPTPAPAAVVEPVALQEE----PAPYVAPQPVVEEQAPAPQEQAPAAE 1028

Query: 605  QQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTE 664
            +        +  R  N+ R+ R  +      REE  R +++A   +A   E+   A   E
Sbjct: 1029 EAAPAPVVSSTGRAPNDPREVRRRK------REEEARRQQEAAAASAPVVEAAPAAAEAE 1082

Query: 665  KARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716
             A     Q +P  E      +   +A  E  A+  +     E E+E   +P+
Sbjct: 1083 SA-----QPSPAAE------EKTEEAATEQPAVKPQH----EAEKENEPKPL 1119