Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 889 a.a., Ribonuclease E and G (NCBI) from Rhodospirillum rubrum S1H

 Score =  431 bits (1109), Expect = e-125
 Identities = 333/986 (33%), Positives = 473/986 (47%), Gaps = 167/986 (16%)

Query: 2   KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61
           KRMLI+A   EE RV ++DG RL + D+E+   +Q K NIY  K+ R+EPSL+AAFV+YG
Sbjct: 3   KRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVEYG 62

Query: 62  AERHGFLPLKEIAREYF------------------------------------------- 78
             RHGFL   EI  +Y+                                           
Sbjct: 63  GNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPA 122

Query: 79  PANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137
           P   S   R   I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y V MPN  R G
Sbjct: 123 PRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGG 182

Query: 138 GISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196
           G+SR+I    DR  LK  +  L  P+G  +I+RTAG  +S   ++ D  + L+ W++I++
Sbjct: 183 GVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQ 242

Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256
              +  AP LIH+E ++I RA RD   +DI EIL++       A+  +  L  P  + K+
Sbjct: 243 TTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKML-TPSHAKKV 301

Query: 257 KLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315
           + Y  EI PLF  YQ+ESQ+++      +L SGG +VI+ TEAL AID+NS R+TR  +I
Sbjct: 302 QPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNI 361

Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375
           EETA+ TNLEAADEIARQLRLRDL GLIVIDFIDM   R    VE R+++A+R DRARIQ
Sbjct: 362 EETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQ 421

Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435
           +  IS FGLLEMSRQRL PSL E+S   CP C G+G++R  ES ++ ILR+IEEE ++  
Sbjct: 422 LGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRR 481

Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495
           + EV   VP  IA Y+LN KR+ + AIE R D  +  ++ +D +  P Y + RV+     
Sbjct: 482 SSEVTVTVPTAIALYILNNKRTVLAAIEARYD-FQVFLLGDDTLIVPDYRMDRVK----- 535

Query: 496 PTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVA-PA 554
                                  AER+  +       A+P   P PT     APV A PA
Sbjct: 536 -----------------------AEREGLD-------ALPAAAPPPT-----APVAALPA 560

Query: 555 PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR-RKPRQ 613
           P+                        +    +E + T +    AE   +   D   + R+
Sbjct: 561 PE------------------------VLEDEDEDEGTVEDEAFAEENGQNGADADGQGRK 596

Query: 614 NNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQ 673
             RR R  R+D      EGS   +E       A + TA++ E        ++  T DE  
Sbjct: 597 RRRRRRRRRKDQDGVEIEGSSVDDE-----EGAPEGTADSTEDE---GADDEGETGDE-- 646

Query: 674 APRRERSRRRNDDKRQAQQEAKALNVEEQSVQETE-QEERVRPVQPRRKQRQLNQKVRYE 732
                           A+     L+  + S+ + + Q  R R  + RR +R        E
Sbjct: 647 ----------------AEDTGDELDPADGSLSDRDGQSRRRRRRRGRRGRRDDTGNGLPE 690

Query: 733 QSV-AEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDN 791
            +V A  A   P+ ++++ +  I  + P    E++       A +AP  ++   A   + 
Sbjct: 691 PAVPASTADTLPLDDDSIESAEI-DDDPTAEDEIIS---STDADSAPAGEDSAAAITDEL 746

Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRP 851
           G   R  RR PR      +RR R +D    T       +A  + +  +G       +   
Sbjct: 747 G---REGRRPPR------RRRPRRKDRGVETNR----AIALDASDAEAGPATAETDLAAF 793

Query: 852 QDVQVEEQREQEEVHVQPMVTEVPV----AAAIEPVVSAPVVEEVAGVVEAPVQVAEPQP 907
            D    E    E +  + ++ E P     A A        +  + A        VA P  
Sbjct: 794 DDAPDAEAPFAEPLGDERLLDETPAEIAEAEAEVETAETDIDRDPADGEPPTAPVAPPPV 853

Query: 908 EVVETTHPEVIAAAVTEQPQVITESD 933
            VV+T  P    AA    P  +  SD
Sbjct: 854 AVVKTPDP----AAAAAPPAAVPSSD 875