Pairwise Alignments
Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113
Subject, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395
Score = 376 bits (965), Expect = e-108
Identities = 254/726 (34%), Positives = 380/726 (52%), Gaps = 85/726 (11%)
Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145
R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I
Sbjct: 276 RYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNA 335
Query: 146 DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205
DR +LK+ L++P G GLIVRTAG ++ ++ D + + WE I++ AP
Sbjct: 336 ADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPA 395
Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265
I++E ++I R+ RD ++I E+L++ + +A+ + + P + +K Y ++PL
Sbjct: 396 KIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMI-MPSHAKNVKNYQDQLPL 454
Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325
F+ +Q+ES + + F V+L SGG IVI TEAL AID+NS RAT+ G IEETA TNLE
Sbjct: 455 FARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLE 514
Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385
AA+E+ARQLRLRDL GLIVIDFIDM ++ AVE R+++ ++ DRARIQ+ IS FGL+
Sbjct: 515 AAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLM 574
Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445
EMSRQRL P + E++ CP C GTG +R ++SL+LSILR IEEE + ++EV PV
Sbjct: 575 EMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPV 634
Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKL 505
IA+YL+N+KR + IETR G+ I + + +P + + E+ T S ++P
Sbjct: 635 SIANYLMNQKREHIAQIETRY-GLSVRIEGDPHLVSPDFSL------EKFKTASRVVPVA 687
Query: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAP 565
+++ T M V A+ A+ A A T A
Sbjct: 688 TAPVVSVD-----------------TSIMDQV-----DADEASDEADEAEVEANDTDVAE 725
Query: 566 AQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDT 625
Q + G+E + + KP+R++ RR+ R+++ D ++ +T
Sbjct: 726 VQ---------------AAGDE--------GEGDNKPKRKRRRRRRRKSSGADGDDSNNT 762
Query: 626 RSERTEGSDNR--EENRRNRRQAQQQTAE---TRESRQQAEVTEKARTADEQQAPRRERS 680
D + ++ + AQ + AE +E+ EV ++ RT R RS
Sbjct: 763 AQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGEVKKRTRTR------TRSRS 816
Query: 681 RRRNDDK-------------RQAQQEAKALNVEEQSVQETEQEERV------RPVQPRRK 721
R++ D+ +A+ E +A+ E ++ E PV+ +
Sbjct: 817 RKKRTDETVAAEAEAPAETDAKAEPEGQAIVTEAKAEDSNAAESEAPVASAEAPVEGAEE 876
Query: 722 QRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQ 781
LN E A EA A EE A+ + EA A + P +AP
Sbjct: 877 PAVLNGDAAAEVPAAAEAETAAATEEAAPAQIVADEATA-EDVVADQDTPAAEASAPAAA 935
Query: 782 EENNAD 787
E AD
Sbjct: 936 EPQAAD 941
Score = 90.1 bits (222), Expect = 7e-22
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61
K+MLI+AT EE RV +VDG ++ + D ES Q NIY K+TR+EPSL+AAFVDYG
Sbjct: 3 KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62
Query: 62 AERHGFLPLKEIAREYF 78
RHGFL EI +Y+
Sbjct: 63 GNRHGFLAFSEIHPDYY 79
Score = 39.3 bits (90), Expect = 1e-06
Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 31/206 (15%)
Query: 583 SGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRN 642
+ ++ +PA ++AK E + D ++ R R+ R R++ T ++
Sbjct: 778 AAADDADAQAEPAEGSDAK-EAEGDGEVKKRTRTRTRSRSRKKRTDETVAAE-------- 828
Query: 643 RRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQ 702
+A +T E QA VTE + E S + A EA EE
Sbjct: 829 -AEAPAETDAKAEPEGQAIVTE----------AKAEDSNAAESEAPVASAEAPVEGAEEP 877
Query: 703 SVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEE----------TVAAE 752
+V + V P + ++ Q VA+EA VV + AAE
Sbjct: 878 AVLNGDAAAEV-PAAAEAETAAATEEAAPAQIVADEATAEDVVADQDTPAAEASAPAAAE 936
Query: 753 PIVQEAPAPRTELVKVPLPVVAQTAP 778
P +AP E P A+ P
Sbjct: 937 PQAADAPTEEPEAAPEPALATAEAEP 962