Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 491 a.a., ribonuclease, Rne/Rng family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  318 bits (814), Expect = 8e-91
 Identities = 195/484 (40%), Positives = 283/484 (58%), Gaps = 14/484 (2%)

Query: 3   RMLINATQQEELRVALVDG----QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58
           RM I+    E++ VAL +      ++ +  +E     + K NIY+G I  ++ +L+AAFV
Sbjct: 9   RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68

Query: 59  DYGAERHGFLPLKEIAREYFPANYSA-HGR--PNIKDVLREGQEVIVQIDKEERGNKGAA 115
           +YGA+++GFL + E+  EY+   + A  G+  P ++ VL+ GQEV+VQ+ KE  G+KGA 
Sbjct: 69  NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128

Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVG 174
           LTT++S+ G +LVL P   + G +SR++E D+ R  L+E L  L    G+G+IVRT   G
Sbjct: 129 LTTYLSMPGRFLVLTPGREQIG-VSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAG 187

Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234
            S   LQ DL F  + W+ I+K      AP LI++E ++  RA RDYL  D+ E+ +D+ 
Sbjct: 188 TSKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDE 247

Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293
               L  ++ + L  P   S +K+Y  +   L+  + I+ Q+E  + REV LPSGG +V 
Sbjct: 248 HTATLIEEYSSLLF-PRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVF 306

Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353
           D TEAL AIDINS + +   + E  A  TN+EAA+ IA+QL+LRD+GG +VIDFI+M   
Sbjct: 307 DQTEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDR 366

Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413
            H R VE  LR A++ DRAR  +  +SRFGLL++ RQR   S    +   CP C G+G  
Sbjct: 367 NHWREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLR 426

Query: 414 RDNESLSLSILRLIEEE--ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471
           R+ E  SL  LR I  +  AL   T          +A +LLN KR  +  +E RQ GV  
Sbjct: 427 RNMEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLE-RQFGVHL 485

Query: 472 VIVP 475
            I P
Sbjct: 486 DIRP 489