Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 1026 a.a., ribonuclease, Rne/Rng family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  381 bits (978), Expect = e-109
 Identities = 260/735 (35%), Positives = 372/735 (50%), Gaps = 115/735 (15%)

Query: 71  KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130
           +++A E          R  I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM
Sbjct: 339 EDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 398

Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189
           PN  R GGISR+I    DR +LKE  + +E+P G GLIVRTAG  ++   ++ D  +  +
Sbjct: 399 PNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKR 458

Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249
            WE I+       AP  I++E N+I R+ RD   +DI E+L++  +   +A+  +  L  
Sbjct: 459 LWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKML-M 517

Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309
           P  +  +KLY   +PLF+ YQ+ES +   F   V+L SGG +VI  TEAL AID+NS RA
Sbjct: 518 PSHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRA 577

Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369
           T+ G IEETA  TNLEAA+E+ARQ+RLRDL GLIVIDFIDM   R+  AVE RL++ ++ 
Sbjct: 578 TKEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKT 637

Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429
           DRARIQ+  IS FGLLEMSRQRL P + E +   C  C GTG +R + SL+LSI+R +EE
Sbjct: 638 DRARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEE 697

Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489
           E ++   +EV    PV + +YL NEKR  +  IE R  G+   +  ++++    + + + 
Sbjct: 698 EGMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRY-GLSVRLEASNELSGADFTIDKF 756

Query: 490 RKGE------ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543
           +         + P +S     + E  +    +EE A+ +                   T 
Sbjct: 757 KTATRKVVELDAPVVSIDTSGVDEAEIVEEPDEEEADTE-------------------TE 797

Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603
           AE AA                                     EET  +E+ AP+     +
Sbjct: 798 AETAAT------------------------------------EET--SEEQAPR-----K 814

Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663
           R++ RR+ R                R  G++N E N     +A  Q+A   +S  QA+++
Sbjct: 815 RRRRRRRSR----------------RGGGTENGESNGDGSDEA--QSAADADSSDQADIS 856

Query: 664 EKART--------ADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715
           E+A +        A+E   P+R R RRR  D  + +       V E  V   E      P
Sbjct: 857 EEAESSQPAVEAEAEEAPKPKRRRRRRRKSDAEEGEAAPDGDAVSE-DVSAPEPAPTPEP 915

Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775
           V   +               A  A   PV E     EP   EAPAP  +    P P  A+
Sbjct: 916 VAEAKAD-------------APAAEAEPVAEAEAPVEPAESEAPAPEVD----PTPETAE 958

Query: 776 TAPEQQEENNADNRD 790
           TAP +  +  +D  D
Sbjct: 959 TAPVEHGDEASDTTD 973



 Score = 89.4 bits (220), Expect = 1e-21
 Identities = 42/77 (54%), Positives = 53/77 (68%)

Query: 2  KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61
          K+MLI+AT  EE RV +VDG ++ + D ES    Q   NIY  K+TR+EPSL+AAFVDYG
Sbjct: 3  KKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62

Query: 62 AERHGFLPLKEIAREYF 78
            RHGFL   EI  +Y+
Sbjct: 63 GNRHGFLAFSEIHPDYY 79



 Score = 37.4 bits (85), Expect = 6e-06
 Identities = 49/185 (26%), Positives = 68/185 (36%), Gaps = 40/185 (21%)

Query: 503  PKLHEEAMALPSEEEFAERKRPEQPALATFAMPD----------VPPAPTPAEPAAPVVA 552
            P +  EA   P  +    R+R +  A    A PD            PAPTP EP A   A
Sbjct: 864  PAVEAEAEEAPKPKR-RRRRRRKSDAEEGEAAPDGDAVSEDVSAPEPAPTP-EPVAEAKA 921

Query: 553  PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPR 612
             AP AA A P A A+  +                E   +E PAP+ +  PE  +    P 
Sbjct: 922  DAP-AAEAEPVAEAEAPV----------------EPAESEAPAPEVDPTPETAE--TAPV 962

Query: 613  QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672
            ++     +E  DT  E T    + E +       Q    E  E+  +A     A   D+ 
Sbjct: 963  EHG----DEASDTTDEETGQPVSEEASEAEAEDPQAVEPELAEAANEA-----APAQDDD 1013

Query: 673  QAPRR 677
              P+R
Sbjct: 1014 TKPKR 1018



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 30/177 (16%)

Query: 884  VSAPVVE-EVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAE 942
            + APVV  + +GV EA + V EP  E  +T                 TE++ A  +E +E
Sbjct: 766  LDAPVVSIDTSGVDEAEI-VEEPDEEEADTE----------------TEAETAATEETSE 808

Query: 943  QAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVE 1002
            +  P    +                  +    AQ AA   +   A++            E
Sbjct: 809  EQAPRKRRRRRRRSRRGGGTENGESNGDGSDEAQSAADADSSDQADIS-----------E 857

Query: 1003 HNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQP 1059
               ++ P   A A E  P+  R    +R + A EG+ A  G   +   SA    P P
Sbjct: 858  EAESSQPAVEAEAEE-APKPKRRRRRRRKSDAEEGEAAPDGDAVSEDVSAPEPAPTP 913