Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 1011 a.a., Rne/Rng family ribonuclease from Ralstonia sp. UNC404CL21Col

 Score =  709 bits (1829), Expect = 0.0
 Identities = 462/1060 (43%), Positives = 597/1060 (56%), Gaps = 113/1060 (10%)

Query: 1    MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
            MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y
Sbjct: 1    MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60

Query: 61   GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
            G ERHGFLP KE+AR YF           I+D LREGQE+IVQ++KEERGNKGAALTTFI
Sbjct: 61   GEERHGFLPFKEVARAYFKDGVDVRNA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 119

Query: 121  SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
            SLAG YLVLMPNNPR GG+SRRIEG+DR EL+E +A LE+P+GM +I RTAG+G+SAE L
Sbjct: 120  SLAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLEVPDGMSIIARTAGIGRSAEEL 179

Query: 181  QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240
            QWDL++ ++ W+A+  AA    AP LI+ ES++++RA RDY + DIGEILID   + + A
Sbjct: 180  QWDLNYLMQLWKAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQA 239

Query: 241  RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300
            R  ++ +  PD  +++K Y  ++PLFS +QIE QIESA+ R V LPSGG+IVID TEAL 
Sbjct: 240  RAFMSVV-MPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALV 298

Query: 301  AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360
            AID+NSARAT+G DIEETA  TNLEAADEIARQLRLRDLGGLIVIDFIDM   + Q+ VE
Sbjct: 299  AIDVNSARATKGADIEETAARTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVE 358

Query: 361  NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420
             RL++A+R DRAR+Q+  ISRFGL+E+SRQRL PSL E SH  CPRC+GTG +RD ES +
Sbjct: 359  TRLKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSA 418

Query: 421  LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480
            L +LR+I+EEA+KENT  +H  VPV +A++LLNEKR  +N IETR   V  +++PN  +E
Sbjct: 419  LQVLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFK-VNVLLIPNKHLE 477

Query: 481  TPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERK---RPEQPALATFAM 534
            TPHY + R+R  +   +    SY + +  E A  L ++  ++ RK   +P Q A      
Sbjct: 478  TPHYKLERLRHDDPRLDDDKASYKMAE--EAAKELEADTAYSTRKEAAKPRQEAAVKGIT 535

Query: 535  PDVP---PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPT 591
            PD P     P    PA    APAP+ APA    PAQ G    F   LK+LF G +  +P 
Sbjct: 536  PDQPAPVSVPRAERPARAEAAPAPQ-APA--PVPAQGG----FVSWLKSLF-GAKPAEPV 587

Query: 592  EQPAPKAEAKPERQQDRRKPRQNNRRDRNER--RDTRSERT---EGSDNREENRRNR--- 643
               A   E   +R ++  +  + NR+DR  R  R  R ER    +G + R+ NR+ R   
Sbjct: 588  --VAAPVETPKQRAEEGNRQGRGNRQDRGGRGQRGERGERQGQGQGQNGRDGNRQGRERN 645

Query: 644  --RQAQQ----------QTAETRESRQQAEVTEKAR-TADEQQAPRRERSRRRNDDKRQA 690
              R+ QQ          Q      +RQ A+V    R TA+ +Q  + +  R    ++ Q 
Sbjct: 646  EAREGQQQGQREGQRDGQRGNRDRNRQPAQVEGAVRETAEARQPQQGQDVRAEGQNQGQG 705

Query: 691  QQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVA 750
            ++E      E Q  +  E  E   P +PR  +     +   +Q   E A         VA
Sbjct: 706  RRERNQERRERQPREGREAREGREPREPRESREPRENRGERDQQAKEAA--------AVA 757

Query: 751  AEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ 810
            AE ++ +  A +   V  PL   A  A     E      +  G     RR  R      +
Sbjct: 758  AEALIDQTAASQ---VSQPLLDTAAPAEGIAGEGVTPGAEGNGEGEERRRRGR------R 808

Query: 811  RRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPM 870
             R RYR +R                E A G             V+ E + E E       
Sbjct: 809  GRNRYRRDR----------------EGAEG-------------VRAEGEGENESAET--- 836

Query: 871  VTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQV-I 929
              E       EPV+ A V E V     APV+   P P V E  H     A V+  PQV  
Sbjct: 837  ADEAVAEMHAEPVLPATVTEPVQTTSFAPVE--NPAPVVHEPVHAAEAVAPVSALPQVQP 894

Query: 930  TESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEV 989
            TE  +A A      A P  E     A  +E + TA   V  P      A+P+       +
Sbjct: 895  TEPALATA-----TAAPAPEATVAVAAPQEAIVTAFAEVPAPVSTIAQASPL------PI 943

Query: 990  ETVAAVEPEVTVEHNHATAPMTRAPAPE-----YVPEAPR 1024
            ET+ +V     +   H  +   RA   E       P  PR
Sbjct: 944  ETLQSVLDNAGMTWVHTDSQKLRASQEEAARTVAAPRVPR 983