Pairwise Alignments
Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113
Subject, 1107 a.a., RNAse E (EC 3.1.26.12) from Paraburkholderia bryophila 376MFSha3.1
Score = 727 bits (1877), Expect = 0.0
Identities = 463/1045 (44%), Positives = 591/1045 (56%), Gaps = 75/1045 (7%)
Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y
Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY 60
Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
G +RHGFLP KE+AR+YF I+D L+EGQE+IVQ++KEERGNKGAALTTFI
Sbjct: 61 GEDRHGFLPFKEVARQYFRDGVDMRSA-RIQDALKEGQELIVQVEKEERGNKGAALTTFI 119
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
SLAG YLVLMPNNPR GG+SRRIEGDDR EL+E +A L+LPEGM +I RTAG+G+SAE L
Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEEL 179
Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238
QWDL++ ++ W AI+ A++S + P LI+ ES++++RA RDY + DIGEILID ++ +
Sbjct: 180 QWDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHD 239
Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298
AR + + PD SK+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA
Sbjct: 240 QARAFMDIV-MPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 298
Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358
L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR
Sbjct: 299 LVAIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 358
Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418
VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES
Sbjct: 359 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 418
Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478
+L +LR+I+EEA+KENT +H VPV + ++LLNEKRS +N IE+R V V+VPN
Sbjct: 419 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFK-VNVVLVPNKH 477
Query: 479 METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535
++TPHY + R+R + + P S+ + + E A L SE +++R +P
Sbjct: 478 LDTPHYKLERLRHDDARLDEPRASWKMAE--EAARELESETGYSKRTEEVKPKQEAAVKG 535
Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595
P P P+ P PV APAP A F G LK LF G + PT A
Sbjct: 536 ITPEKPAPSAPVRPVAAPAPVAVTQASGG---------FIGWLKNLF-GMQPAAPT-PVA 584
Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR-----RQAQQ-- 648
P A KP R Q R + + R D R G+ R+ R RQ QQ
Sbjct: 585 PAATEKPARPQQRGERSERGERTGERGGDRNRNRRSGAGGRDAAARGEATNGGRQGQQPS 644
Query: 649 QTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEE--QSVQE 706
Q E RE R+ EV + AR E + PR R R N + R+ ++ +A E + +
Sbjct: 645 QRREEREPREGREVRD-AREGREPREPREAREPRGNREAREGREPREAREPREGRDNRER 703
Query: 707 TEQEERVRPVQ-PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTEL 765
+ ER + +R +RQ + R AE ET A + A L
Sbjct: 704 DNRGERAETAEGAQRGERQERGERRERGERAERGERRKPQAETADAMTQAEAQTAEELAL 763
Query: 766 VKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLR------------------- 806
+ V AP QE D + RR RR R R
Sbjct: 764 AQNQTAVTDNAAPVDQEAVARDGEER-RRRRRGRRGGRREREEDVNGNLAADVAEAEGDN 822
Query: 807 VSGQRRRRYRDERYPTQSP------------MPLTVACASPELASGKVWIRYPIVRPQDV 854
V+ R P QS P+ V A+ + V + +
Sbjct: 823 VNVSDDAPVRTAHQPVQSKPEVSEAREVKEVAPVEVVVAAVATETAVVTELHAATETPAL 882
Query: 855 QVEEQREQEEVHVQPMVTEVPVA-AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETT 913
VE+ + E V V EVP A AA+EPVV APV + VA V P Q A E V
Sbjct: 883 AVEKAAKTETV---VPVAEVPAAPAAVEPVVQAPVAQAVAPV--EPAQAAPAAAETVSLV 937
Query: 914 HPEVIAAAVTEQPQVITESDVA-VAQEVAEQAEPVVEPQEETADIEEVVE----TAEVVV 968
P V A P +++ A V A AE + P E A ++VE A V
Sbjct: 938 EPVVREEAAAVAPAAEAQAEQAHVEPAAAAPAEVIAAPAAEPAPQPQIVEQKPVVAAVAP 997
Query: 969 AEPEVVAQPAAPVVAEVAAEVETVA 993
A +PA A AAEV VA
Sbjct: 998 AADSAAVEPAPVAAAPQAAEVADVA 1022
Score = 38.1 bits (87), Expect = 4e-06
Identities = 41/122 (33%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 497 TLSYMLPKLHEEAMAL-PSEEEFAERKRPEQPALA---TFAMPDVPPAPTP----AEPAA 548
T+S + P + EEA A+ P+ E AE+ E A A A P PAP P +P
Sbjct: 933 TVSLVEPVVREEAAAVAPAAEAQAEQAHVEPAAAAPAEVIAAPAAEPAPQPQIVEQKPVV 992
Query: 549 PVVAPAPKAAPATP----AAP--------AQPGLLSRFFGALKALFSGG---EETKPTEQ 593
VAPA +A P AAP A+ S+ A +A F+GG E KP +
Sbjct: 993 AAVAPAADSAAVEPAPVAAAPQAAEVADVAEATQASQAPSASRASFNGGVSAEALKPVLE 1052
Query: 594 PA 595
A
Sbjct: 1053 QA 1054
Score = 30.0 bits (66), Expect = 0.001
Identities = 78/335 (23%), Positives = 106/335 (31%), Gaps = 67/335 (20%)
Query: 444 PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503
PV A + K A E ++ V+V ET V + ETP L+ +
Sbjct: 830 PVRTAHQPVQSKPEVSEAREVKEVAPVEVVVAAVATETAV--VTELHAATETPALA--VE 885
Query: 504 KLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP----VVAPAPK--A 557
K + +P E A E A A P P A PAA +V P + A
Sbjct: 886 KAAKTETVVPVAEVPAAPAAVEPVVQAPVAQAVAPVEPAQAAPAAAETVSLVEPVVREEA 945
Query: 558 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 617
A PAA AQ A +A AP AE P+ Q +KP
Sbjct: 946 AAVAPAAEAQ---------AEQAHVEPAAAAPAEVIAAPAAEPAPQPQIVEQKP------ 990
Query: 618 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 677
+ +D+ A + A + Q AEV + A QAP
Sbjct: 991 -------VVAAVAPAADS----------AAVEPAPVAAAPQAAEVADVAEATQASQAPSA 1033
Query: 678 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLN---QKVRYEQS 734
R+ S E ++PV + +N K+R Q
Sbjct: 1034 SRA----------------------SFNGGVSAEALKPVLEQAGLVWVNTDADKLRAAQE 1071
Query: 735 VAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVP 769
A + V P V P V AP + E K P
Sbjct: 1072 AAAQTVKPPRVVRERKPLPPVDSAPMQQVETGKHP 1106