Pairwise Alignments

Query, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113

Subject, 1097 a.a., ribonuclease E from Burkholderia phytofirmans PsJN

 Score =  729 bits (1883), Expect = 0.0
 Identities = 464/1064 (43%), Positives = 607/1064 (57%), Gaps = 72/1064 (6%)

Query: 1    MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
            MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y
Sbjct: 1    MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY 60

Query: 61   GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
            G +RHGFLP KE+AR+YF           I+D LREGQE+IVQ++KEERGNKGAALTTFI
Sbjct: 61   GEDRHGFLPFKEVARQYFRDGVDMRSA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 119

Query: 121  SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
            SLAG YLVLMPNNPR GG+SRRIEGDDR EL+E +A L+LPEGM +I RTAG+G+SAE L
Sbjct: 120  SLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEEL 179

Query: 181  QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238
            QWDL++ ++ W AI+ A++S  +  P LI+ ES++++RA RDY + DIGEILID  ++ +
Sbjct: 180  QWDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHD 239

Query: 239  LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298
             AR  +  +  PD  SK+K Y  ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA
Sbjct: 240  QARAFMDIV-MPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 298

Query: 299  LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358
            L AID+NSARAT+G DIEETA  TNLEAADE+ARQLRLRDLGGLIVIDFIDM   + QR 
Sbjct: 299  LVAIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 358

Query: 359  VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418
            VE RL++A++ DRAR+Q+  ISRFGL+E+SRQRL P+L E SH  CPRC+GTG +RD ES
Sbjct: 359  VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 418

Query: 419  LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478
             +L +LR+I+EEA+KENT  +H  VPV + ++LLNEKR+ +N IE+R   V  V++PN  
Sbjct: 419  SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFK-VNVVLIPNKH 477

Query: 479  METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535
            ++TPHY + R+R  +   + P  S+ + +  E A  L SE  +++R    +P        
Sbjct: 478  LDTPHYKLERLRHDDARLDDPRASWKMAE--EAARELESETGYSKRTEEVKPKQEAAVKG 535

Query: 536  DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595
              P  P P+ P  PV APAP A   TPA+    G L   FG   A  +        +Q  
Sbjct: 536  ITPEKPAPSAPVRPVAAPAPVA--VTPASGGFIGWLKNLFGVQPAAPAPVAPAATDKQAR 593

Query: 596  PKAEAKPERQQ---DRRKPRQNNRRDRNERRDT--RSERTEGSDNREENRRNRRQAQQQT 650
            P+   + ER +   +R   R  NRR     RD   R E T G    +  + ++R+ +++ 
Sbjct: 594  PQRGERTERGERTGERGGDRNRNRRTGTGTRDAAGRGEGTTGGRQAQGQQPSQRREEREP 653

Query: 651  AETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQE 710
             E RE+R+  E  E AR A E +  R  R  R   + R+A++  +     ++  +  E+ 
Sbjct: 654  REGRETREGREPRE-AREAREPRGNREPREAREGREPREAREPREGRENRDRDNRGAERA 712

Query: 711  ERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770
            E         +Q +  ++ R E++   E        +T  A+ + Q       ELV+   
Sbjct: 713  ETAEAAPRGERQERGERRERGERAERGER----RKPQTETADALTQSEAQTAEELVQNQT 768

Query: 771  PVVAQTAPEQQE--ENNADNRDNGGMPRRSRRSPRHLRVSGQ------------------ 810
             +    AP  QE      + R      RR  R  R   V+G                   
Sbjct: 769  ALGENGAPIDQEAVAREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDNASATDE 828

Query: 811  ---RRRRYRDERYP----TQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQE 863
               R      ER P     +   P+ V  A+    +  V   +       + VE+  + E
Sbjct: 829  APVRTAHQPVERKPEVVEAKDVTPVEVVVAAVATQTAVVTELHAATETPALAVEKAAKTE 888

Query: 864  EVHVQPMVTEVPVA-AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAV 922
             V     V E PVA A +EPV   PV +  A  VEA  Q A    E V    P     A 
Sbjct: 889  TV---VPVAEAPVAPAVVEPVAETPVAQAAAEPVEA-AQAAPAASETVSLVEP----VAR 940

Query: 923  TEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVV 982
             E P        A A   A    PVVE Q   A     VETA   VA    VAQPA    
Sbjct: 941  VEAP--------AHAHVEAPAVAPVVEAQ-AAAPAPAPVETAAPAVAIEAPVAQPARQ-- 989

Query: 983  AEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHS 1026
            AE+      VAAV P        A  P   A AP+  P+APR +
Sbjct: 990  AEIVEPQPVVAAVAP---APEPAAVEPAPLAVAPQAAPQAPRQA 1030