Pairwise Alignments

Query, 276 a.a., predicted amidase and lipoprotein (NCBI) from Escherichia coli BW25113

Subject, 288 a.a., N-acetylmuramoyl-L-alanine amidase from Rhodopseudomonas palustris CGA009

 Score =  139 bits (350), Expect = 7e-38
 Identities = 89/234 (38%), Positives = 122/234 (52%), Gaps = 16/234 (6%)

Query: 43  RIKVLVIHYTA-DDFDSSLATL--TDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99
           R  ++V+HYT   D + +L  L     +VS+HY+V           RI Q VPE + AWH
Sbjct: 55  RPDMIVLHYTGMPDVEGALTRLCKAGTEVSAHYVVLE-------DGRILQCVPESKRAWH 107

Query: 100 AGISAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIK 159
           AG+++W G   +N  SIGIE+ NRG         +  +   QI A+I L + II R  + 
Sbjct: 108 AGVASWAGEEDINSCSIGIEIINRGHDWG-----YPDYPLRQIAAVIALCRGIILRRDVP 162

Query: 160 PENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASLL 219
           P  VV H+D+AP RK DPG  FPW+ LA  G+G W +  R+    A +      +   L 
Sbjct: 163 PHRVVGHSDVAPARKKDPGEKFPWRSLAASGVGLWVEPARIVPGPALKQGTEGDEVRLLQ 222

Query: 220 ELLARYGYDVKPDMT-PREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEK 272
           + LA YGY V  + +       V+ AFQ HFRP   +G ADA T A   ALL +
Sbjct: 223 QALADYGYRVPVNGSYDHATTDVVTAFQRHFRPEKVDGIADASTLATLHALLAR 276