Pairwise Alignments

Query, 375 a.a., 23S rRNA m(5)U747-methyltransferase (NCBI) from Escherichia coli BW25113

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score =  141 bits (356), Expect = 3e-38
 Identities = 107/377 (28%), Positives = 176/377 (46%), Gaps = 13/377 (3%)

Query: 8   AGRCRSCQWIMQPIPEQLSAKTA---DLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVS 64
           A +C  CQW     P Q+ AKT    D    L     E      +    G+RNK    + 
Sbjct: 82  ADKCGGCQWQTVDYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLR 141

Query: 65  GSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122
            S    +     R G+    +L  CP+      P+ A +K  IA      Y+   +   L
Sbjct: 142 RSDRGEVQAGYFRKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGL 201

Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182
           +++ L   Q  G +++  +   D       +A  WL +  P +  + +N+ P H   + G
Sbjct: 202 RHLGLRIGQRTGEILITLIATDDQLPEVEAQAEQWLTDY-PNVVGVCLNLNPSHGNRILG 260

Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242
           +    L  +  L E  +D+   I P++FFQ N   A +L    +D++R      ++DL+C
Sbjct: 261 DETHCLAGRPYLIECLDDLEFAIGPETFFQVNTEQAERLLPILKDFLRGSD--RLFDLYC 318

Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ-GDVP 301
           GVG   L  A+    + G+EI  E++  A+Q+A   G++ ++F+A  + +   AQ  + P
Sbjct: 319 GVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEFRA-GAVEILLAQIPESP 377

Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358
           + VL++PPR+G    + + L    P+ I Y SCN  T+A+D++ L     +R+  VQ  D
Sbjct: 378 DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLVQPLD 437

Query: 359 MFPHTAHYEVLTLLVKQ 375
            FP TAH E + LL  Q
Sbjct: 438 FFPQTAHVETVALLELQ 454