Pairwise Alignments

Query, 306 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 304 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  277 bits (709), Expect = 2e-79
 Identities = 135/304 (44%), Positives = 208/304 (68%), Gaps = 1/304 (0%)

Query: 1   MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP 60
           ML Y+++RL   +  +F VS+L+F  +H L GDPA ++  P +  Q I+  R  +G D+ 
Sbjct: 1   MLRYILQRLGQSVLVMFGVSLLIFYSLH-LTGDPAAVMMPPGSSQQEIDNFRHSMGFDRS 59

Query: 61  LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA 120
           L  Q+WHY++  +QGD G S+   +PV + I  R   TL L IT+++W+ + G+  GI++
Sbjct: 60  LTWQYWHYLTGVLQGDLGESLRYSQPVTELIGQRVPATLLLAITALLWSTVAGLLLGIVS 119

Query: 121 AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTL 180
           A+++N   D +S  +A SG + P F LG+LLI  FS+ L WLP+ G  S    ++P+++L
Sbjct: 120 ALYQNTLWDLVSRLLAFSGQAVPVFWLGLLLIIAFSLNLRWLPSGGYGSASQLVMPAISL 179

Query: 181 GAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
           GA   + +AR  RAS +DVL +DY+RTARAKG+S   +V++HGLRNA+IPV+T+ G+ F 
Sbjct: 180 GAYYMSAIARLIRASLIDVLQQDYIRTARAKGLSRWRIVVRHGLRNALIPVITVQGMYFA 239

Query: 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAIN 300
            LLGG++V E +F WPG+GRL V +++ RD+P++QA +LL +L F+ INL++D+LY  +N
Sbjct: 240 SLLGGALVTEIIFAWPGIGRLAVQAIQNRDFPLVQAIVLLAALVFVGINLIIDLLYVVLN 299

Query: 301 PAIR 304
           P IR
Sbjct: 300 PRIR 303