Pairwise Alignments

Query, 306 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 313 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  282 bits (721), Expect = 8e-81
 Identities = 140/313 (44%), Positives = 207/313 (66%), Gaps = 8/313 (2%)

Query: 1   MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP 60
           ML Y+I+RLL  IP + +V++ VFL + + PGDPA +IAG  A  + +  +R  LGL++P
Sbjct: 1   MLGYLIRRLLAAIPVMGVVALFVFLLLRLTPGDPAAIIAGDSATPEQLMRIRTSLGLNEP 60

Query: 61  LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA 120
           LY QF+ +I   + GD G+S++S+ PV   I  R  PT+ + ++++V +VI  +  G++A
Sbjct: 61  LYVQFFTWIGRLLHGDLGVSLISQVPVLQMIGQRIEPTITVALSTIVLSVIVAVPLGVVA 120

Query: 121 AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSW--------QH 172
           A     W DR  M ++V G S P F +G +LIQ+F++EL WLP  G            + 
Sbjct: 121 AWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELRWLPVQGFRPMARGFGPFAER 180

Query: 173 YILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232
            +LP+LTL     A++AR TRA+ +DVL EDY+RTARAKG++E+ V+L+H LRNA +PV+
Sbjct: 181 LVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGINESRVLLRHALRNAAVPVI 240

Query: 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVV 292
           T++G  F  L+ G +V E VFN PG+GRL VD+V  RDYPVIQ  ILL S  ++ +NL++
Sbjct: 241 TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLI 300

Query: 293 DVLYAAINPAIRY 305
           D+ Y  ++P IRY
Sbjct: 301 DLAYTLLDPRIRY 313