Pairwise Alignments

Query, 306 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 336 a.a., ABC transporter permease subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  258 bits (660), Expect = 1e-73
 Identities = 141/339 (41%), Positives = 206/339 (60%), Gaps = 37/339 (10%)

Query: 1   MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAG-----PEADAQVIELVRQQL 55
           M +++ +RL  LIPT F +++L F  + M+PGDP  ++ G     PE  AQ +E    +L
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAME----RL 56

Query: 56  GLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMA 115
           GL++PLY Q+  Y+    QGD G S+ +R  V  E  + F  TL L++ ++++A I G+ 
Sbjct: 57  GLNKPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLL 116

Query: 116 AGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGA-------- 167
           AG+IAA+ R    D   M I+++G S P F  G++LI  FSV LGW P  G         
Sbjct: 117 AGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIE 176

Query: 168 --------------------DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRT 207
                               D+  H ILP++ LG    AV+AR TR+S ++VL EDY+RT
Sbjct: 177 PRTGFMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRT 236

Query: 208 ARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVE 267
           A+AKG+S   VV  HGLRNA+IPV+T++GLQ G LL G+++ E +F+WPG+G+ L++++ 
Sbjct: 237 AKAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIG 296

Query: 268 MRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
            RDYPV+Q  ILL +   IL+N VVD+LY   NP IR++
Sbjct: 297 ARDYPVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335