Pairwise Alignments

Query, 741 a.a., putative transport protein (VIMSS) from Escherichia coli BW25113

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 463 TVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIIS 522
           T  + I  AL++FF    +  +A  + ++L +     P       T+++   N    ++ 
Sbjct: 17  TYGLKILFALVIFFVGKYFAGVAQKVVHKLLNSRKVDP-------TVVSFVANLSWAVVF 69

Query: 523 TITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI 582
             TI+  L +IGV  A L+A  GA GLA+    Q  + +  +GV +        GD +  
Sbjct: 70  VFTIIATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEA 129

Query: 583 GPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDAD-- 640
             + GTV+ ++I S  +R       + P SSI         +   + NY    +   D  
Sbjct: 130 AGIAGTVDEITIFSTKLRTPDNKVIVAPNSSI---------MNGTITNYSASENRRIDLV 180

Query: 641 -----KANQA-LKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTLRVSFTTLP---- 690
                 A+ A  K  + E+++N +    ++ EP +   VGLS  A +  ++F   P    
Sbjct: 181 ICVSYSADLAQTKKVLTEILDNNQ---YVLKEPGYT--VGLSELA-SSSINFVVRPWVKT 234

Query: 691 LKQWTVRFALDSQVKKHFDLAGVRAP 716
              WT RF +  Q+K   D A +  P
Sbjct: 235 ADYWTARFEILEQIKNALDAADIEIP 260