Pairwise Alignments

Query, 716 a.a., ATP-dependent DNA helicase (NCBI) from Escherichia coli BW25113

Subject, 644 a.a., ATP-dependent DNA helicase from Rhodanobacter denitrificans MT42

 Score =  198 bits (503), Expect = 8e-55
 Identities = 195/682 (28%), Positives = 289/682 (42%), Gaps = 88/682 (12%)

Query: 21  QIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLV 80
           ++PDF PR  Q+ M   V + + G +   L  EA TG GKT +YL+P +       + ++
Sbjct: 25  ELPDFAPRLAQQVMARAVQQAIVGRDT--LVAEAGTGTGKTYAYLVPAL----RSGERVI 78

Query: 81  VSTANVALQDQIYSKDLPLLKKII-PDLKFTAAFGRGRYVCPRNLTAL----ASTEPTQQ 135
           +ST   ALQDQ+Y +DLP ++ ++   LK     GR  Y+C   L       AS +  Q 
Sbjct: 79  ISTGTKALQDQLYFRDLPKVRSVLGARLKTALLKGRANYLCLYRLEQTVREGASLDRAQA 138

Query: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195
             LA +        + ++   A                  ++  +  LW R+++   +CL
Sbjct: 139 AQLATIRAWSARTRRGDRMELA------------------EVPEESPLWPRVTSTAENCL 180

Query: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVMA--AMESEA---VLPDPKNLLLVLDEG 250
              C +Y +C  F ARRE  EA+VVV NH L+ A  A++ E    +LP       +LDE 
Sbjct: 181 GVECPFYDDCHVFKARREAMEADVVVVNHHLLFADLALKQEGFGEILPGAA--AFILDEA 238

Query: 251 HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEE 310
           H +P++A      S        R   D+    +  C                 +      
Sbjct: 239 HQIPELAGQFFSQSVSA-----RQLTDMAQDTLTEC---------------SGVTGAIGL 278

Query: 311 LYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDL 370
           L E + +L N L     A      R A   L D   E+   L +L E+L  LAEL  +  
Sbjct: 279 LLEPVEALQNALRKLRLAMDPLPSRGAFALLEDRA-EVRAALHELGELLATLAELLASQA 337

Query: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430
               G   +  LH              A+    RL  + ++ G    +W     R   L+
Sbjct: 338 ERSRG---LANLHE------------RAELFAERLQRVVETHGDQDVRWYETFPRGFALY 382

Query: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490
                  + ++  +  L  R+    I TSATL    +F       GL E    R + LDS
Sbjct: 383 ----ATPLDLAAPMRGLRERTQAAWIHTSATLSVAGNFDHFARQLGLDEP---RTLCLDS 435

Query: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550
           PF++  Q    +P    +P+  +  + + E           +  L    LF S RA++R 
Sbjct: 436 PFDYARQALCYLPSGLPDPNARDYTERVIEAVLPVLHASRGRAFL----LFTSHRALRRA 491

Query: 551 LDYVTDLRLM-LLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609
            + + D     L VQG  PR RL+E  R   A+G   VL+G  SF EG+D+ G+ LS V 
Sbjct: 492 AELLQDKAPWPLFVQGSAPRPRLLEEFR---ASGH-GVLLGAASFWEGVDVVGEALSVVV 547

Query: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669
           I K+ F   D PV++     L+     PF    +PSA   L Q  GRLIRS    G +V+
Sbjct: 548 IDKLPFAAPDDPVLMARLAALEQSGINPFMGWQVPSAVIALKQGAGRLIRSVHDRGVLVL 607

Query: 670 YDKRLLTKNYGKRLLDALPVFP 691
            D RL  K YGK  L ++P  P
Sbjct: 608 CDPRLTGKGYGKLFLASVPPMP 629