Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 442 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  420 bits (1079), Expect = e-122
 Identities = 217/379 (57%), Positives = 277/379 (73%), Gaps = 1/379 (0%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M+F SLGL   +LRA+   GY+ PTP+Q QAIP VL GRDLMA+AQTGTGKTAGF LPLL
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L    P       +RAL+L PTRELA Q+ E++R Y+++L + +   +GGVSINPQMM
Sbjct: 61  QRLTMEGPKV-APNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMM 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
           KLR GVDVLVATPGRLLDL  QNAVK  Q++ L+LDEADRMLD+GF  ++R +   LP +
Sbjct: 120 KLRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQ 179

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQ LLFSATFSD+I+ LA ++L++PL IEV+ RN A+  V Q V  VDKKRK +L  H++
Sbjct: 180 RQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLM 239

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            K  W QVLVF +T+ G + L ++L   G+ +  IHG+K Q  R RAL  FKS ++++LV
Sbjct: 240 KKHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILV 299

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATD+AARGLDI++LP VVN +LP V EDY+HRIGRTGRA  TGEA+SLVC DE +LL  I
Sbjct: 300 ATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAI 359

Query: 361 EKLLKKEIPRIAIPGYEPD 379
           E L ++ + R     +EP+
Sbjct: 360 EVLTRQTLERKEEQDFEPE 378