Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  484 bits (1246), Expect = e-141
 Identities = 257/464 (55%), Positives = 331/464 (71%), Gaps = 13/464 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGLS  ++RA+   GY +PTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QHL----ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116
           + L    +  +    G R  R L+LTPTRELAAQ+ E+ + Y++ L   S  +FGGV +N
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176
           PQ+  +  GVDVLVA PGRLLDL  Q +V L  VEILVLDEADRMLDMGF+HD+++VL +
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236
           LPAKRQNLLFSATFS+DI +LA KLLHNP  IEV   NT  +++ Q V  +    KR LL
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240

Query: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296
           +H+I  G W+QVLVFTRTKHGAN LAE L+K G+ + AIHGNKSQ ART+ALADFK+GD+
Sbjct: 241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300

Query: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356
           R++VATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 357 LRDIEKLLKKEIPRIAIPGYE------PDPSIKAEP-IQNGRQQRGGGGRGQGGGRGQQQ 409
           L+ IE++ K++I    + G++        P ++  P ++N R  R   G G     G++ 
Sbjct: 361 LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRD 420

Query: 410 PRRGEGGAKSASAK-PAEKPSRRLGDAKP-AGEQQRRRRPRKPA 451
             + +G  K A+A    E+P+R+  + KP  G  +  +R  +PA
Sbjct: 421 KGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPA 464