Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  501 bits (1289), Expect = e-146
 Identities = 268/452 (59%), Positives = 331/452 (73%), Gaps = 8/452 (1%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGLS  IL+A+  +GY+ P+PIQ QAIP VLEGRDL+A+AQTGTGKTAGFTLPLL
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           + L   Q    G + VRALILTPTRELAAQI +N+  YSKYL ++S VVFGGV I PQ+ 
Sbjct: 61  ELL--SQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQIT 118

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
            LR G+D+LVATPGRLLDL  QNAV    +EILVLDEADRMLDMGFIHDI+R+L  LPAK
Sbjct: 119 TLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAK 178

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQNLLFSATFS +I+ LA  LLHN  E+ V  RN+A++ V Q +  VDK +K  LL+ + 
Sbjct: 179 RQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELT 238

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
               WQQVLVF RTKHGAN L  Q++ +GI++AAIHGNKSQ ART+ALADFK G IR+L+
Sbjct: 239 RFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLI 298

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATDIAARG+DI ELP+VVN+ELP+VPEDYVHRIGRTGRA A+GEA SLVC +E K LRDI
Sbjct: 299 ATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDI 358

Query: 361 EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAKSA 420
           E+L+K+ +PR    G+EP   +   P +N  + + GG +       + Q R+ +G +++A
Sbjct: 359 ERLIKQSLPRKEFVGFEPVHGL--PPSENQGKSKPGGSKQGAKPGNKSQGRKPQGQSRNA 416

Query: 421 SAKPAE----KPSRRLGDAKPAGEQQRRRRPR 448
             K  +    +  R   D  P+  +Q RR  R
Sbjct: 417 QPKQRQGSRAQEERSQQDKNPSRSEQPRRERR 448