Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  502 bits (1293), Expect = e-147
 Identities = 273/484 (56%), Positives = 349/484 (72%), Gaps = 35/484 (7%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGLS  IL+AVA++GY+ P+PIQ QAIPAVL G+D+MA+AQTGTGKTAGFTLPLL
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           + L+++ P A+ ++ VRAL+LTPTRELAAQI E+V  Y ++L +RS VVFGGV I+PQ+ 
Sbjct: 61  E-LLSQGPRARSKQ-VRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQIS 118

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
           +L+ GVD+LVATPGRLLDL  Q+AV   Q+E LVLDEADRMLDMGFIHDI+++L  LP K
Sbjct: 119 QLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPK 178

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQNL+FSATFSD+I+ LA+ L++NP+EI V  RN+ ++ V Q +  VDK +K   L  +I
Sbjct: 179 RQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLI 238

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            +G+WQQVLVF+RTKHGAN LA+ L   GI +AAIHGNKSQGART+ALA+FKSGD+RVLV
Sbjct: 239 QQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLV 298

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATDIAARGLDI++LP VVN++LPNVPEDYVHRIGRTGRA A G+A+SLV  +E KLL DI
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADI 358

Query: 361 EKLLKKEIPRIAIPGYEPD---PSIKAEPIQNGRQQ-----------RGGGGRGQGGGRG 406
           E+L+ K +PR  + G+EP    P     P ++G+ +           +    R   G R 
Sbjct: 359 ERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQRS 418

Query: 407 QQ--QPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQ-----------------RRRRP 447
            +  QPRRG+    +   +   +     G +KPA E Q                 RRRR 
Sbjct: 419 DKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQAQNQGKQEHRDGNAPARRRRR 478

Query: 448 RKPA 451
           R+P+
Sbjct: 479 RRPS 482