Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  412 bits (1059), Expect = e-119
 Identities = 214/379 (56%), Positives = 278/379 (73%), Gaps = 5/379 (1%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M F+S    P+ILRA+++ GY++ TPIQQQAIPA+  G+D++ASAQTGTGKTA F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q ++   P    +   R LILTPTRELAAQ+ ENV  YSKYLN   L ++GGV +  Q  
Sbjct: 61  QKMV-ENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQ 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
           KL+ G D++VATPGRLL  EH  A  + L  V+ LVLDEADRMLDMGF  DI+++L  + 
Sbjct: 120 KLKRGADIIVATPGRLL--EHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVN 177

Query: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238
            KRQNLLFSATFS  +K LA +++  P  I   ++NT +D V+Q V+ V+++RKRELLS 
Sbjct: 178 KKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSE 237

Query: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298
           +IGK NWQQVLVFT T+  A+ L ++LN DGI S  +HG K+QG+R RAL +F SG +RV
Sbjct: 238 LIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358
           LVAT++AARGLDI  L +VVN++LP + EDYVHRIGRTGRA  +G A+S V  +E + L 
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 359 DIEKLLKKEIPRIAIPGYE 377
           DIEKL+ ++I RI +PGYE
Sbjct: 358 DIEKLIGQKIRRITVPGYE 376