Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 520 a.a., RNA helicase from Herbaspirillum seropedicae SmR1

 Score =  536 bits (1382), Expect = e-157
 Identities = 279/444 (62%), Positives = 335/444 (75%), Gaps = 11/444 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF +LGLS +I+RAV+EQGY  PTPIQ QA+PAVL G DL+A AQTGTGKTAGFTLPLL
Sbjct: 1   MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  QHLITRQPHAK--GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
           Q L +  P  K  G  P+RALIL PTRELAAQ+ E+VR Y KYL + S  +FGGV INPQ
Sbjct: 61  QRL-SAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQ 119

Query: 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
           +  L+ GVD+LVATPGRLLD   Q  V L  ++ILVLDEADRMLDMGFI DIR+VL  LP
Sbjct: 120 ITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALP 179

Query: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238
            KRQNLLFSATF+D+IK LA+ LL+NP  IEVARRN+  + + Q +H VD+ +K  +L+H
Sbjct: 180 PKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAH 239

Query: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298
           +I    W+QVLVFTRTKHGAN L EQL +DGI + AIHGNKSQ ART+ALA+FK G +  
Sbjct: 240 LIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTA 299

Query: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358
           L+ATDIAARG+DI++LPHVVNY+LPNVPEDYVHRIGRTGRA ATGEA+SLVC+DE  LL 
Sbjct: 300 LIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLH 359

Query: 359 DIEKLLKKEIPRIAIPGYEPDPSIKAEPIQ----NGRQQRGGGGRGQGGGRGQQQPRRGE 414
           DIE+ +K+EIP   I G+EPDP+ K +PIQ     GR Q GG   G+GG R   +     
Sbjct: 360 DIERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGG---GRGGQRSAPRKPAAN 416

Query: 415 GGAKSASAKPAEKPSRRLGDAKPA 438
           G   +A+AKPA KP+      +PA
Sbjct: 417 GNGNAAAAKPA-KPANGGNGGQPA 439