Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 479 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score =  407 bits (1046), Expect = e-118
 Identities = 227/464 (48%), Positives = 297/464 (64%), Gaps = 13/464 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGL   +LR + +  Y+ PTP+Q +AIPAVL G D+MA+AQTGTGKTAGF LPLL
Sbjct: 1   MSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L+   P     R  R L+L PTRELA Q+ ++   Y K L++R L  +GGVSINPQMM
Sbjct: 61  QRLVQHGPEVSSNR-ARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMM 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
           KLR GVDVLVATPGRLLDL  QNAV+ DQV+ LVLDEADRMLD+GF  ++  V   LPA+
Sbjct: 120 KLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALPAQ 179

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQ LLFSATF+DDI+ +A  +L  P+ I V+  N  + ++ Q V  VDKK K +L  H++
Sbjct: 180 RQTLLFSATFTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLV 239

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            + NW+  LVF +T++G ++LA  L+K G     IHG+K Q AR RAL  FK+G++ +LV
Sbjct: 240 AENNWEHALVFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLV 299

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATD+AARGLDI+ LP V+N +LP V +DYVHRIGRTGRA A+G A+SLVC DE   L  I
Sbjct: 300 ATDVAARGLDIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAI 359

Query: 361 EKLLKKEIPRIAIPGYE-----PDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEG 415
           E L+++ + R   PG+E     P  S   + I+  ++ +         G  Q   ++   
Sbjct: 360 EALIRQTLRREEEPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPQAAPGAVQALSKKPRP 419

Query: 416 GAKSASAKPAEK------PSRRLGDAKPAGEQQRRRRP-RKPAA 452
               +  KPA +          L    P   Q+ R +P  KPAA
Sbjct: 420 QIDESKRKPAAQGAVAASKGTSLSSNSPFAMQKPRSKPASKPAA 463