Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 515 a.a., RNA helicase from Burkholderia phytofirmans PsJN

 Score =  568 bits (1464), Expect = e-166
 Identities = 301/453 (66%), Positives = 354/453 (78%), Gaps = 11/453 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSFDSLGLS  ++RAV E GY  PTPIQ QAIPAVL G DL+A AQTGTGKTAGFTLP+L
Sbjct: 1   MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL 60

Query: 61  QHLITRQP--HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
           Q L T        G+R VRALILTPTRELAAQ+ E+VR Y KYL ++S V+FGGV INPQ
Sbjct: 61  QRLNTMPAVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ 120

Query: 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
           +  LR GVD++VATPGRLLD   Q  + L  +EILVLDEADRMLDMGFIHDI+RVL KLP
Sbjct: 121 IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP 180

Query: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238
            KRQNLLFSATFSD+IK LA+ LL +P  IEVARRNT ++ V Q +H VD+ +KRELL+H
Sbjct: 181 PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH 240

Query: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298
           +I + NW QVLVFTRTKHGAN LAEQL KD I + AIHGNKSQ ARTRALA+FK G ++V
Sbjct: 241 LIKQHNWFQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQV 300

Query: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358
           LVATDIAARG+DI++LPHVVNY+LPNVPEDYVHRIGRTGRA ATGEA+SLVCVDE +LL+
Sbjct: 301 LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK 360

Query: 359 DIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRGQGGGRGQQQPRRGEGGAK 418
           DIEKL+K+ +P+  I G+EPDP+ K EPI   R+ +GGGG   GGGR    PR+G+G  K
Sbjct: 361 DIEKLIKRPVPQEVIAGFEPDPTAKPEPIL--RRGQGGGG---GGGR---SPRQGQGAPK 412

Query: 419 SASAKPAEKPSRRLGDAKPAGEQQRRRRPRKPA 451
              A  A KP++R G     G+QQ + +  KPA
Sbjct: 413 RDGAGSA-KPAQRSGQRPANGQQQPKPQGAKPA 444