Pairwise Alignments

Query, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  493 bits (1269), Expect = e-144
 Identities = 269/456 (58%), Positives = 342/456 (75%), Gaps = 10/456 (2%)

Query: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF SLGLS  I +AV EQGY  P+PIQ QAIPAVL G+D+MA+AQTGTGKTAGFTLPLL
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           + L+++   AK  + +RAL+LTPTRELAAQ+ E+V  Y KYL +RS VVFGGV INPQ+ 
Sbjct: 61  E-LLSKGNKAKAGQ-IRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQ 118

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
           KLR GVDVLVATPGRLLDLE Q AVK +Q+E+LVLDEADRMLDMGFI DI+++L  LPAK
Sbjct: 119 KLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAK 178

Query: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
           RQNL+FSATFSD+I+ LA+ L++ P+EI V  RN A++ V Q +  VDK +K  LL  +I
Sbjct: 179 RQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLI 238

Query: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            + +WQQVLVF+RTKHGAN LA+ L +  I +AAIHGNKSQGART+ALADFKSG++RVLV
Sbjct: 239 KQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATDIAARGLDI++LP VVN++LPNVPEDYVHRIGRTGRA A G+A+SLV  +E KLLRDI
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDI 358

Query: 361 EKLLKKEIPRIAIPGYEPDPSIKAEPIQ-NGRQQRGGGGRGQGGGR--GQQQPRRGEG-- 415
           E+L+ + + R  + G+ P  ++    +  +G++ +      Q   R  G+  PR G G  
Sbjct: 359 ERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGRD 418

Query: 416 GAKSASAKPAEK---PSRRLGDAKPAGEQQRRRRPR 448
           G K+ + K A+      ++  +A+P   Q+  +  R
Sbjct: 419 GRKTPAPKTADNGDLAQQKGQNAQPNSSQRNNQGQR 454