Pairwise Alignments

Query, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  164 bits (414), Expect = 4e-45
 Identities = 110/367 (29%), Positives = 180/367 (49%), Gaps = 42/367 (11%)

Query: 7   LRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLIT 66
           L  IW +++   ++ + V DGFD+GVG+L  F+ ++ ++R +M+N++AP WDGN+ WL+ 
Sbjct: 5   LSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFV-QDSSDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIG 126
            G  LFAA+P+ Y+   S  Y+ +I +L  L FR V F++R K+   R +++WD     G
Sbjct: 64  GGAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRER-QHVWDKAFIGG 122

Query: 127 SFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGAT 186
           S V     GV  G  + G+P  V++     Y G     L PF L  G+  +      G T
Sbjct: 123 SLVATFFQGVVLGAFISGLP--VEDRA---YAGGALDWLTPFSLFCGLALIVAYALLGCT 177

Query: 187 YLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246
           +L MRT G+L  R            LV   +  +W                     PL  
Sbjct: 178 WLMMRTAGDLQRRMHDIGIPLVWAVLVVTGIVSLW--------------------TPLTH 217

Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIIL-- 304
             + E   W   F+   +L+ +P   +VL     L   + + A    F  LTLA I L  
Sbjct: 218 PDIAE--RW---FSMPNLLYFMPVPVLVLLCAFGLLRSIQRYANYMPF-LLTLALIFLGY 271

Query: 305 -TAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMF 363
              GI+++P ++P       S+++W+A +   +       A++++P+IL+YTAW Y+   
Sbjct: 272 SGLGISLWPNIIP------PSVSIWEAAAPPQSQGFTLVGALLILPLILMYTAWSYYVFR 325

Query: 364 GRITKED 370
           G+++ ED
Sbjct: 326 GKVSAED 332