Pairwise Alignments

Query, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

Subject, 334 a.a., cytochrome d ubiquinol oxidase subunit II from Rhodopseudomonas palustris CGA009

 Score =  174 bits (442), Expect = 2e-48
 Identities = 124/363 (34%), Positives = 175/363 (48%), Gaps = 43/363 (11%)

Query: 10  IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGG 69
           IW  ++   +  + V DGFD+G+G+L   L R   +R +++NS+AP WDGN+ WL+  GG
Sbjct: 8   IWAFIIAFAVFVYVVMDGFDLGLGILFP-LFRAKRDRDVIMNSVAPVWDGNETWLVLGGG 66

Query: 70  ALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFV 129
            LFAA+P+ YA      Y  +I +L  L FR V F++R + +  R RN WD   F+GS V
Sbjct: 67  GLFAAFPLAYAVLMPALYTPIIAMLLGLAFRGVAFEFRWRTQ--RERNRWDVAFFLGSLV 124

Query: 130 PPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQ 189
             L  GVA G LLQGV      Y      G ++  L PF LL GV  V      GAT+L 
Sbjct: 125 ATLAQGVALGALLQGVHVEGRAY-----AGGWWDWLTPFSLLTGVALVIGYALLGATWLV 179

Query: 190 MRTVGELH---LRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNK 246
           M+T G+L     R      +A LV +V  + A  ++ Y         +   +A  N L  
Sbjct: 180 MKTTGDLRDTAYRLSRWLLLALLVAIVAVSAATPFLSYDY-------SQRWFAWPNVLAT 232

Query: 247 EVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTA 306
             V             P+  AI    V   LL  L  R D     F+ +    A      
Sbjct: 233 AQV-------------PLAVAI----VTALLLRALAQRRDYQP--FLLTLCLFALSYAGL 273

Query: 307 GIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRI 366
           GI+++P+V+P S      +T+W A + + +   M     +LVPIIL YTAW YW   G++
Sbjct: 274 GISLWPYVVPRS------ITIWQAAAPENSQLFMLVGVAILVPIILTYTAWAYWVFRGKV 327

Query: 367 TKE 369
             E
Sbjct: 328 DPE 330