Pairwise Alignments

Query, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

Subject, 341 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  235 bits (600), Expect = 1e-66
 Identities = 136/367 (37%), Positives = 196/367 (53%), Gaps = 31/367 (8%)

Query: 6   VLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLI 65
           +L  IW++L G+L   + V DGFD G+G L  F  RN+ ERR + N+  P WDGN+VWLI
Sbjct: 1   MLETIWFVLWGLLWAVYFVLDGFDFGLGTLLPFAARNEAERRTIYNAAGPFWDGNEVWLI 60

Query: 66  TAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFI 125
           TAGG  FAA+P  YA  FS  Y  ++++L +L FR V F++R+KI+   WR +WD   F+
Sbjct: 61  TAGGVTFAAFPKAYAVMFSALYAPLLILLFALIFRAVSFEFRNKIDSPGWRKVWDVFQFL 120

Query: 126 GSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA 185
           G+FVP L+ GVAF NL  G+P + +      Y GN  +LLN +GLL GV  V M    GA
Sbjct: 121 GNFVPALLFGVAFANLFMGIPVDGNG----VYHGNLLKLLNLYGLLGGVFFVLMFALHGA 176

Query: 186 TYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLN 245
            ++ +++ G+LH R  A A+      L+C ALA                   + A+  + 
Sbjct: 177 LWMGIKSTGDLHDRAVALAR-GIWPLLLCAALA-------------------FLAATAVY 216

Query: 246 KEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILT 305
             +        VN+   P L   P L V   L T      +    A+V +++ + C+   
Sbjct: 217 TSL-------YVNYMKFPPLLVFPILAVASLLTTRFFIASNSVGMAWVCNAVFIVCVTFF 269

Query: 306 AGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGR 365
               M+P ++PSS     S+T+ +  SS LTL +M  V  + VPI+L Y AW Y     +
Sbjct: 270 GVFGMYPALLPSSMDPAFSVTIANGASSPLTLKIMLTVVAIFVPIVLAYQAWVYSVFTHK 329

Query: 366 ITKEDIE 372
           IT ED+E
Sbjct: 330 ITDEDLE 336