Pairwise Alignments

Query, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

Subject, 379 a.a., cytochrome BD oxidase subunit II from Herbaspirillum seropedicae SmR1

 Score =  433 bits (1113), Expect = e-126
 Identities = 207/379 (54%), Positives = 271/379 (71%), Gaps = 1/379 (0%)

Query: 1   MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
           + DYE L+ IWW  VGVL+IGFA+TDGFD GVGM+  F G+NDTERRI+IN+I P W+GN
Sbjct: 2   IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61

Query: 61  QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
           Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD
Sbjct: 62  QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121

Query: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
           WG+FIG FVPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF LLNPFGLLAG++SV M+
Sbjct: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181

Query: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240
           +  GA +  ++T   +  R+R T   AALVT++ F   G WV   + GY + S  D  +A
Sbjct: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240

Query: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300
             PL K V   AGAW  N+   P+    PALGV   +L  L A +  A  AF+ S+L++ 
Sbjct: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300

Query: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360
            IILTAG+++FPFVMPSS    +SLT+WD+ SS  TL +M W+ ++ +P+I++YT W Y 
Sbjct: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360

Query: 361 KMFGRITKEDIERNTHSLY 379
            + G++T  DI  N H+ Y
Sbjct: 361 VVKGKVTARDIHENEHTAY 379