Pairwise Alignments

Query, 493 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

Subject, 516 a.a., proton-dependent oligopeptide transporter (POT) family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  203 bits (516), Expect = 1e-56
 Identities = 136/492 (27%), Positives = 252/492 (51%), Gaps = 37/492 (7%)

Query: 6   SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYNDTHAYELFSAYCSLVYVTPILG 65
           S+  +   V  +++WE F +YGM+AL++ ++  +L ++D+ A  ++SA  +L+YV+P +G
Sbjct: 9   SKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALIYVSPAIG 68

Query: 66  GFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLL 125
           G++ DK+LG +  ++LGA ++++G+ ++     +  F++ +L +IV G GLFK N   L+
Sbjct: 69  GWVGDKILGTKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVGNGLFKPNAGNLV 128

Query: 126 GELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE--------EYSWAMGFGLAAVG 177
            ++YE  D + D  F++ Y A NVGS  + +   + ++        E+ W   F +  VG
Sbjct: 129 RKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVG 188

Query: 178 MIAGLVIFLCGNRHFTH------TRGVNKKVLRATNFLLPNWGWLLVLLVATPALITILF 231
           ++ GL  +   ++   +      TR VNKK L             +VL +A  +++    
Sbjct: 189 ILVGLGNYALMHKSLANYGSEPDTRPVNKKSL------------AIVLALAALSVVASAI 236

Query: 232 WKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLI--VTLTFFSMLFWAFAQQGGS 289
             E+   A +     G+ VL   +      +  +  GLI  + LT  ++ F+ F QQ  +
Sbjct: 237 ILEYEDVARVFVYAAGVAVLGIFFHLIRTSEPSERAGLIAALILTVQTVFFFIFYQQMST 296

Query: 290 SISLYIDRFVNRD--MFG---YTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRI 344
           S++L+  R V+ D  +FG   +T   A FQ++N   +M+    LAW    +   N+   I
Sbjct: 297 SLALFALRNVDWDFQVFGTHLWTWSPAQFQALNPIWIMVLSPVLAWSYSWAGRNNKDFSI 356

Query: 345 WGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITR 404
             KFALG  +++ GF I   + ++ A+ G +S  +M+ G A     EL +  + ++ I R
Sbjct: 357 AAKFALGFAVVAIGFFIYGFAGQF-AVNGKTSSWVMIWGYASYSLGELLVSGLGLAMIAR 415

Query: 405 IEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITW 464
                + G + G Y + SG I+ YL GV+A+  S    D    +  ++  Y  +F+++  
Sbjct: 416 YVPARMGGFMMGAYFVASG-ISQYLGGVVANFASVPQ-DLVDPLQ-TLPVYTNLFNKLGV 472

Query: 465 GALACVGLVLMI 476
            A+ C  + L +
Sbjct: 473 AAVVCTIIALAV 484