Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 418 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score = 64.3 bits (155), Expect = 7e-15
 Identities = 97/443 (21%), Positives = 171/443 (38%), Gaps = 60/443 (13%)

Query: 7   KRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTN 66
           K S +ALA+A  T+    +A  ++ ++GF++D++L   +      RD KD   GD     
Sbjct: 5   KWSVIALAVAAGTSQMA-LASQQSESKGFVEDASLDLLLRNTYFNRDYKDGA-GDVRSWG 62

Query: 67  LSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSNKAYDEDWSG 126
               T      F+SG+     G+ + A+  + +  +G   +     F +       D +G
Sbjct: 63  QGFIT-----TFESGFTQGTIGVGVDAYGLLGVRLDGGRGYTYGAMFER-------DSNG 110

Query: 127 D-KSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANFDYG-- 183
           D +  +S   AA K ++     + G   P+   L       +P ++ G    +N   G  
Sbjct: 111 DPERDLSQAGAAIKAQFSNTVIKYGNQFPSMPVLAYDDSRLLPESFTGTLITSNEIEGLE 170

Query: 184 -DAGALSF-SYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNFVLEAAFG 241
            +AG  +  S M T+          D     D+T K   +   G  Y F +N      + 
Sbjct: 171 LNAGRFTADSAMQTSS--------RDSLNYLDRTLKS--IDVIGGTYAFNDNLSASLYYA 220

Query: 242 QAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRDKVDDRSVNDLYDGTAWLQALTF--G 299
             E    + +A  +Y    A +  + ++ F    +K D ++  +  D T W  A  +  G
Sbjct: 221 DNEDVAKKKYANINYVMPFADAQ-SLAFDFNIYDNKYDKQAFGETQDTTIWSLAAKYSVG 279

Query: 300 YRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNR--SDFNANGEKAV 357
             A  +   R+ G     DG   Y +          +G   IW  N   SDFN+  E++ 
Sbjct: 280 SHAFILAHQRVTG-----DGNYEYDI---------GDGGGSIWVANSYYSDFNSKDERSW 325

Query: 358 FFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTIEESAYSLDAVYTI 417
                 D   + +PG     +YVY  +    T +     ++++              Y +
Sbjct: 326 QASYELDFSGYGVPGLFWKTAYVYGDNVDTGTGEGKEREFFNQ------------VQYVV 373

Query: 418 QDGRAKGTMFKLHFTEYDNHSDI 440
           Q G AK    KL  + Y ++SD+
Sbjct: 374 QSGPAKDLSLKLRNSIYRSNSDM 396