Pairwise Alignments

Query, 468 a.a., predicted outer membrane porin (NCBI) from Escherichia coli BW25113

Subject, 440 a.a., outer membrane porin from Pseudomonas syringae pv. syringae B728a

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 106/477 (22%), Positives = 174/477 (36%), Gaps = 79/477 (16%)

Query: 4   FSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDS--TLTGGIYYWQRERDRKDVTDGD 61
           F GKR  LAL + G++A+        ++A+GF+DDS  TLT   YY   +RD KD  DG 
Sbjct: 17  FRGKRCGLALGLLGISAIPD-----PSQAQGFLDDSHGTLTLRNYY--MDRDYKD--DGT 67

Query: 62  KYKTN--LSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSSHPNEIAFSKSN-K 118
           +  T         NA   F  G     FGLD  A   +++  + D S    +  S S+ +
Sbjct: 68  RTATREWAQGFIMNAESGFTQGPVG--FGLDARALVGVKLDSSPDRSGTELLPVSASDGR 125

Query: 119 AYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGA 178
           A DE         S      K K+     + G +        A     +P T++G    +
Sbjct: 126 AADE--------YSRLALTGKLKFHETTLKTGDVSIFLPFAFASPSRLLPQTFRGTTLTS 177

Query: 179 NFDYGD----AGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKVDYLHSFGAKYDFKNNF 234
             D  D    AG +       +    P  +       N   T   ++   G  Y    + 
Sbjct: 178 K-DIDDLTLHAGYIDRVNKRDSSNYQPISIASPNRRFNGAATS-SHMAYAGGDYQVNKDL 235

Query: 235 VLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD-------KVDDRSVNDLY 287
            L     + +    Q      +K  I    LTT  + + +RD       +VD+++++ L 
Sbjct: 236 SLRVYHAEVDDLYTQNTLALLHKLAIGDGELTTDLRSFFSRDTGSAKAGEVDNQNLSALL 295

Query: 288 DGTAW---LQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWD 344
            G  W     +L + + + D     + GT +         L  MT +    N +   W  
Sbjct: 296 -GYRWGGHSVSLGYMHSSGDTATPYVSGTELMG-------LSEMTMSSDFLNAKERTW-- 345

Query: 345 NRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQSNPDAYYDKNRTI 404
                     +A++    YD     L G      YV   + + A + ++           
Sbjct: 346 ----------QAIY---DYDFTAVGLVGLRSRLRYVRGDNIELAAFNADDR--------- 383

Query: 405 EESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNIFQDERDVKFMV 461
           +E  + ++  Y +Q G  K        + Y N  D P+     G  F+DE   +F+V
Sbjct: 384 KEREFQMELGYVVQSGPLKNVGLLARKSIYRN--DFPA-----GAAFRDENQTRFIV 433