Pairwise Alignments

Query, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 1377 bits (3563), Expect = 0.0
 Identities = 689/1041 (66%), Positives = 847/1041 (81%), Gaps = 3/1041 (0%)

Query: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
            M  FFIDRPIFAWVIAI++MLAG LAI  LPV+QYP IAPP V ISA+YPGA AKT++D+
Sbjct: 1    MARFFIDRPIFAWVIAILVMLAGVLAIKSLPVSQYPNIAPPTVVISANYPGASAKTLEDS 60

Query: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
            VTQVIEQ M G+DNL Y++S SD  G  +ITLTF +  DADIAQVQVQNKLQ AMPLLPQ
Sbjct: 61   VTQVIEQRMTGLDNLRYINSTSDGFGNAEITLTFNAEADADIAQVQVQNKLQSAMPLLPQ 120

Query: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
            EVQ QGV V KS+S FLMV+G ++ DG++T+ DI+DYV +N++D +SR +GVG++ LFG+
Sbjct: 121  EVQAQGVRVNKSTSGFLMVLGFVSEDGSLTKNDIADYVGSNVQDPLSRVAGVGEITLFGA 180

Query: 181  QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
             YAMRIW++P +L ++ LT  DVI AI+ QNAQV+AGQLGG P V GQ+LNA++ AQ+RL
Sbjct: 181  PYAMRIWLDPLKLTQYSLTTQDVIAAIREQNAQVSAGQLGGAPAVLGQELNATVSAQSRL 240

Query: 241  TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
             + E+F KI+LK + +G++V L DVA++ELG E+Y + + +NG+PA+GL I LATGANAL
Sbjct: 241  ETPEQFRKIILKSDTNGAKVFLGDVARVELGAESYVVESFYNGRPAAGLAISLATGANAL 300

Query: 301  DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
            DTA  +R ++A+M+PFFP+GL +VYPYDTTPFVK SI  VV TL+EA++LVF++MYLFLQ
Sbjct: 301  DTATRVREKIAEMKPFFPAGLDVVYPYDTTPFVKQSIEGVVHTLLEAVVLVFVIMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVLLGTFA+L+AFGFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
             EEGL P EATRKSM QI GALVGI + LSAVFVPMAF  GSTG IYRQFSITIVSAMAL
Sbjct: 421  QEEGLGPVEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480

Query: 481  SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
            SVLVALILTPALCATMLKP+  G H  G+ GFFGWFNR FEK T  Y  SV  IL+ + R
Sbjct: 481  SVLVALILTPALCATMLKPLKPG-HSHGQHGFFGWFNRSFEKMTSRYEGSVAAILKRSAR 539

Query: 541  YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
             + +YL +VV   ++F+R+P++FLPDEDQG+    V LP  ++QE T KVL ++  ++  
Sbjct: 540  VMAIYLALVVATGWIFMRMPTAFLPDEDQGILFAQVILPTNSSQESTVKVLEKMDKFFRE 599

Query: 601  KEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 660
             EK+NV SVF+V GF FAG GQN GIAFV +KDWA R GE   V ++  RA  AFSQIK+
Sbjct: 600  DEKDNVNSVFSVAGFSFAGMGQNMGIAFVGMKDWAVREGEGQDVFSLQGRAMMAFSQIKE 659

Query: 661  AMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNG 720
            A VFAF  PA++ELGTA GFDF L D+ G GH KL +ARNQLL  AA++P+ L  VRPNG
Sbjct: 660  AFVFAFAPPAVIELGTANGFDFYLQDKNGQGHAKLLEARNQLLGMAAQNPN-LVGVRPNG 718

Query: 721  LEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYR 780
             ED P +++DID  K +ALGV I+ +N+ +  AWGGSYVNDFIDRGRVKKVYV  +A+YR
Sbjct: 719  QEDAPMYQLDIDHAKLRALGVDISSVNSAIATAWGGSYVNDFIDRGRVKKVYVQGDAEYR 778

Query: 781  MLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEA 840
            M P+D+  WYVR A+G+MVPFSAF++ RW++GSPRLER+NGLP+M I G  APG STG+A
Sbjct: 779  MQPEDLNTWYVRNANGEMVPFSAFATGRWDFGSPRLERFNGLPAMNIQGATAPGYSTGDA 838

Query: 841  MELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFS 900
            M+ +E++  +LP G G +W G+SY+ERLSGNQAP+LYA+S++VVFL LAALYESWS+PF+
Sbjct: 839  MKDIEKIVEQLPPGFGVEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFA 898

Query: 901  VMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGL 960
            V+LVVPLG+IGALLA   RGL+NDV+FQVGLLTT+GL+ KNAILIVEFAK+  +K G GL
Sbjct: 899  VVLVVPLGIIGALLAMNGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEK-GAGL 957

Query: 961  IEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIF 1020
            IEATL AVR+RLRPILMTSLAF LGV+PL ISTG GSGAQNA+GTGV+GGM+++T L IF
Sbjct: 958  IEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVLGGMMSSTFLGIF 1017

Query: 1021 FVPVFFVVVRRRFSRKNEDIE 1041
            FVP+FFV+V R FS++ +  +
Sbjct: 1018 FVPLFFVIVERIFSKREKQAQ 1038